Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241815g00003 ATGGCACTGGCCAAAGACCAAATTCCTCATGATTCAAGCATGGGAAGCAAGGTTCAAAGTTGTGTTTTCAATGAAAATAATGCTGTGGAGATTAACACCATAAGGGTTAATGAGTACCACAAATCTGTGCTAGAAGAGGAAGATGGCTCACAAAGCACTAATGGCTTCAGCAATGATTCAGCTATAACTCATTCTCCTCCTCTATGTGGCAATGGCTATGCTTATAAGGGCACAAACTATCAACTTGAAGAAGAACAACAATCTTTGATTGATTTCAAAGCCGCTTGCTACAACAATCTAACACAAGTAGCTAGTGAATCTTTGCTTAACTTTGAGCAGAACAGAATGGTCCCTGTCAACACTTACATGAAAGATGACATTAGTGTTTGGGAGAACAATTTGCATCATCAATGGAGTCAGATAAGTCCAAGAAGCACTTCAGAGCTGAGACAGGTGCAGGATTCAAGTTGCTTCCAGTCTTCTAGCAGTAGCTACAGCACCATAGTAGTCAACAGTGCAAAGGAGAAGCAATTACATGGTGAGAGTTCATCATATGGTTGGCTCTACTCTCATCAAACCATACCTGATCATTGCATCCAGGACCCTGGAGTTCAAGAGCCAATATCCAAAAAGCGCATTTCTACGGCTGAGAACATGAAAGCTGCCAAGAAGCAATGCACAAATGAGAGTAAAATGCCAAAATCCAACAAATCAGGAGCATCCAAGGATCCTCAAAGTGTGGCTGCTAAGAATAGAAGAGAGAGGATAAGTGAGCGGCTCAAGATACTACAAGAACTAGTTCCCAATGGCTCCAAAGTTGATTTGGTTACAATGCTGGAGAAAGCAATTAGCTATGTGAAGTTTCTTCAGCTTCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGCTCAAGGTGGAAAAGCTCCTGATATCTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAAAGATCAGAGAAAGAAGTTCAACCTCAAAGTAGATGA 1014 0.4152 MALAKDQIPHDSSMGSKVQSCVFNENNAVEINTIRVNEYHKSVLEEEDGSQSTNGFSNDSAITHSPPLCGNGYAYKGTNYQLEEEQQSLIDFKAACYNNLTQVASESLLNFEQNRMVPVNTYMKDDISVWENNLHHQWSQISPRSTSELRQVQDSSCFQSSSSSYSTIVVNSAKEKQLHGESSSYGWLYSHQTIPDHCIQDPGVQEPISKKRISTAENMKAAKKQCTNESKMPKSNKSGASKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPAQGGKAPDISQVKEAIDAILSSQRSEKEVQPQSR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241815g00003 337 MobiDBLite consensus disorder prediction 213 252 - -
Stsc241815g00003 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Stsc241815g00003 337 FunFam Transcription factor bHLH83 238 297 - -
Stsc241815g00003 337 Gene3D - 234 297 IPR036638 GO:0046983
Stsc241815g00003 337 MobiDBLite consensus disorder prediction 220 245 - -
Stsc241815g00003 337 CDD bHLH_AtIND_like 241 303 - -
Stsc241815g00003 337 SMART finulus 246 295 IPR011598 GO:0046983
Stsc241815g00003 337 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 94 298 IPR045843 GO:0003700|GO:0006355
Stsc241815g00003 337 Pfam Helix-loop-helix DNA-binding domain 250 290 IPR011598 GO:0046983
Stsc241815g00003 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 300 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241815g00003 Stsc-Chr241815 20143 21683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241815g00003 84 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.899 3.00e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241815g00003 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241815g00003 - - gmx:100810010 400.979