Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241815g00002 ATGGAGAGTCCTCATTCTCCTTCTTCTTTCCCTTCCTCGCCTTCCTATTCATCCTCCTCCGAGGGTCACAGCGCCGACGCCACCTTCGACGCCGACGAGCCCCGCACGCCCCTCGCAGTCCGCCGGGCACTCCAGCTTCTCTACTCCGGCGACCCCGAGCTCCGGGTCCAGGCAGCCCGCGACATCCGGAGGCTCACAAAGACCTCCCACCGCTGCCGCCGACAGCTGTCTGAAGCTGTCGGTCCGCTCGTTTCCATGCTCCGAGTCGATTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAGGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCCATAATCAGTTTCCTCAAGTCAGAAGATCTAAATCTGCAGGAGTCTGCAACTGCATCTCTGCTCACACTTTCTGCCTCTTCAACCAACAAACCGATCATCAGCGCAAGTGGAGCCATTCCTCTTCTTGTGGACATCCTTAGAGATGGAACCCCACAAGCCAAAGCTGATGCAGTTATGGCTCTGTCTAACTTATCAACGTACCCTGTTAACCTCGGCATCATCCTCCACACAAATCCAATCCCTTTCATAGTGGACATTCTCAAAACTTGCAAGAAATCGTCAAAAACAGCTGAAAAATGCTGTTCCTTGATAGAATCCTTGGTGGAATACGACGAGGGAAGAATCGCCCTGACATCAGAAGAAGGCGGTGTGCTTGCAGTTGTGGAGGTTCTTGAAAGTGGTACACTCCAAAGCAGGGAGCACGCTGTTGGAGCTTTATTGGCGATGTGCGAAAGTGACAGGTGTAAATACAGGGAACCAATCCTTAGAGAAGGCGTGATCCCGGGACTTCTAGAGCTAACTGTTCAGGGGACTCCAAAGTCTCAGTTGAAGGCACGCACTCTTTTGCAGCTGCTAAGAGAGTCTCCTTACCCGAGATCTGAAATTCAGCCAGACACACTTGAGAACATAGTTTGCAACATCATTTCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTGCAAGTTAGCATGGAACAGAGTTTAAGGCATTTACAGCAAAGGGCTCTTGTATGCACACCAACAAGTGATCTTCCAATAGCTTCAGAAGTTCCTTCAAAATCATAG 1182 0.5076 MESPHSPSSFPSSPSYSSSSEGHSADATFDADEPRTPLAVRRALQLLYSGDPELRVQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSEDLNLQESATASLLTLSASSTNKPIISASGAIPLLVDILRDGTPQAKADAVMALSNLSTYPVNLGIILHTNPIPFIVDILKTCKKSSKTAEKCCSLIESLVEYDEGRIALTSEEGGVLAVVEVLESGTLQSREHAVGALLAMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPIASEVPSKS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241815g00002 393 SUPERFAMILY ARM repeat 42 345 IPR016024 -
Stsc241815g00002 393 FunFam U-box domain-containing protein 4 24 376 - -
Stsc241815g00002 393 Pfam Armadillo/beta-catenin-like repeat 110 147 IPR000225 GO:0005515
Stsc241815g00002 393 MobiDBLite consensus disorder prediction 1 34 - -
Stsc241815g00002 393 PANTHER U BOX DOMAIN-CONTAINING 24 322 - -
Stsc241815g00002 393 SMART arm_5 150 190 IPR000225 GO:0005515
Stsc241815g00002 393 SMART arm_5 109 149 IPR000225 GO:0005515
Stsc241815g00002 393 SMART arm_5 235 275 IPR000225 GO:0005515
Stsc241815g00002 393 SMART arm_5 66 107 IPR000225 GO:0005515
Stsc241815g00002 393 MobiDBLite consensus disorder prediction 1 25 - -
Stsc241815g00002 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Stsc241815g00002 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Stsc241815g00002 393 Gene3D - 27 378 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241815g00002 Stsc-Chr241815 2970 6549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241815g00002 40 317 U-box Gene Family AT2G23140 33.929 1.57e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241815g00002 - - gmx:100809684 617.076