Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241814g00012 ATGGATCATGTGATTGGTGGGAAGTTTAAACTTGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTCTTTATATCTGTTAATATACAAACTGGAGAGGAGGTGGCTTGTAAGCTGGAGCCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCGAAATTATATATGCTTCTTCAAGGAGGAACGGGGGTTCCCCACCTCAAGTGGTTTGGTGTTGAGGGAGACTACAATGTCATGGTTATTGACCTCCTCGGTCCAAGTCTGGAAGACTTGTTTAATTATTGCAACCGTAAGTTCACATTGAAGACAGTGTTAATGCTTGCTGATCAATTGATTAACAGAGTCGAATATATGCATTCAAGAGGTTTTCTTCACCGGGACATAAAGCCAGACAATTTTTTAATGGGCTTAGGTCGTAAAGCGAATCAGGTGTACATTATTGACTACGGCCTTGCGAAAAAGTATAGGGATCTTCAAACTCATAGACACATACCATACAGGGAAAACAAGAATCTTACCGGTACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCCCTCGGCTATGTGCTCATGTACTTCTTAAGGGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCAACAAAAAACAAAAATATGATAGAATCAGTGAGAAGAAAGTATCAACTCCGATAGAGGTGCTCTGCAAATCATATCCTGCTGAGTTTGTATCATACTTCCATTACTGCCGTTCTTTGCGGTTTGAAGACAAGCCAGATTATTCATATCTAAAGAGACTTTTCCGTGATCTGTTTATTCGAGAAGGCCATCAATTTGACTATGTTTTTGATTGGACTGTATTGAAGTATCCACATGTTGGCGACAGCAGCTCTCGAGGCCGGAATGGTGCTGGCAAGGCAGCTATGAATGCTGGGCCAACTGCATATCAACCTGAAAAGATCTCAGGTGGAAGAGATAGCCGAGATAAATTCTCTGGTGCTGTTGATGTATACGACCGAAGGAACCAAATGGGTAGCCCTCGTGTTGACCACATGAGATACAGAAGTTCCGACGATGTAGCAATACATATGCACCCTGATGAATACCATGACCAATACAATACTCGATACGCCAGCACTTCGAGAAGGGCCATGGTCACATCAAATAAGCATGTTTCCTCGGGCGACTATGGTTATGCTGGGATGACTCCGAGTAGGGGTTATGGTGGCATGACTCCGAGTAGAGGCTACGGTGGGATGACCCCGAGTAGGGGTCATGCCGGTAACCCTGGCATGACCCCAAGCAGGGGCTTTCCTGTTCATCCTGGCATGACCCCGAGCAGGGGCCATCCAACCACCACACATCGAATTCAACCTATTTATGAGACGAAACAAGCAACTTTTACTCGAAACGGATCTACAAGACGCCAGCGTGAGCGTGACGATACTCTAAGGAATTTCGAACACCTTAATATCAGAAAGTAA 1500 0.4513 MDHVIGGKFKLGRKIGSGSFGELFISVNIQTGEEVACKLEPVKTRHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYDRISEKKVSTPIEVLCKSYPAEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGHQFDYVFDWTVLKYPHVGDSSSRGRNGAGKAAMNAGPTAYQPEKISGGRDSRDKFSGAVDVYDRRNQMGSPRVDHMRYRSSDDVAIHMHPDEYHDQYNTRYASTSRRAMVTSNKHVSSGDYGYAGMTPSRGYGGMTPSRGYGGMTPSRGHAGNPGMTPSRGFPVHPGMTPSRGHPTTTHRIQPIYETKQATFTRNGSTRRQRERDDTLRNFEHLNIRK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241814g00012 499 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Stsc241814g00012 499 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241814g00012 499 FunFam Putative Casein kinase I 1 85 - -
Stsc241814g00012 499 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241814g00012 499 CDD STKc_CK1_delta_epsilon 8 281 - -
Stsc241814g00012 499 Gene3D Transferase(Phosphotransferase) domain 1 1 324 - -
Stsc241814g00012 499 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc241814g00012 499 MobiDBLite consensus disorder prediction 301 333 - -
Stsc241814g00012 499 FunFam Casein kinase 1-like protein 1 331 - -
Stsc241814g00012 499 PANTHER CASEIN KINASE-RELATED 9 363 - -
Stsc241814g00012 499 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241814g00012 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241814g00012 Stsc-Chr241814 72789 78372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241814g00012 1 230 EF-hand Containing Proteins AT2G38910 27.309 3.46e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc241814g00012 Pkinase 3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241814g00012 K08960 - gmx:100789031 716.842