Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241813g00002 ATGGCTCTGCAACTCCAATCCTCCTTCTCCTCCTCTTCCACCCGTTCTTTTTGTTCTTCTTCCTCCTCTTTCAACCATGCATACAAATACGATGTGTTTATTAGTTTCCGAGGTGAAGATACTCGCTATGGTTTTACCGGCTATCTTTATGAAGCTCTTTCTAATAAAGGAATCCATGCTTTCATTGATGATGAGGAGCTTCAAAAAGGGGACGAAATCGCACCTTCGCTTCTCAGCTTAATTCAAGAGTCTAGGATTGCCATCATTGTCCTTTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTGGATGAGCTTGTCCATATCCTTCACTGCATCAAGGGAAATAATCGGTTGGTTTTGCCGGTTTTCTATAACGTTGATCCTTCTGATGTTCGCCATCTAAAAAAGAGTTTCGGAGAGGCAATGGCTAAGCATGAGGAGAGATTCAAGAATGACATGAACAAGGTGCTCAAATGGAAGAAGGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAATGATGGGGATGGATATGAACATAAGTTTATTAGAGATATTGTGGAAAACATTTCAAGAAAGGTTAGGTTTGTACCTTTTCATGTTGCTGATTACCCTGTTGGACTAGAATCTCGAGTACCAGAAGTAATTTCCCTTTTGAAAATGGATTCTAATGATCGAGTTCACATGGTAGGGATACATGGGATTGGTGGCATAGGAAAAACAACACTTGCTCTTGCTGTTTATAATCTGATTGCTAACAATTTTGAAGGGGTGTGCTTTCTTGAAAATGTGAGAGAAAATTCAAATAAATATGGGTTAGTACATCTTCAAAATATCCTTCTTTCTAAAATAATAGGGAAGGATGAAGTCCATATTCTAGGTGTTAATGAAGGAACCTCACAGGTACAACAAAGGCTATGTCAAAAGAAGGTTCTTTTGGTTCTGGATGACGTTGATGATTGCAGGCAGCTACAGGCTGTTGCTGGGAAACTGGATTGGTTTGGTCCTGGCAGCAGAGTTATTATTACAACACGTGACACACATTTGCTAAAATGTCATGGTGTTCAAGATACATATGAGGTACATGATTTAAATGAGGATGACTCTTCTCAATTGCTTATTAAAAAAGCTTTTGAAAATGACAATGTTAGCCCAATTTACACAGATGTTTTAAATCGTGCTATTGCTTATGCCTCGGGACACCACTGGCTTTGGAAATAA 1227 0.3896 MALQLQSSFSSSSTRSFCSSSSSFNHAYKYDVFISFRGEDTRYGFTGYLYEALSNKGIHAFIDDEELQKGDEIAPSLLSLIQESRIAIIVLSPNYASSSFCLDELVHILHCIKGNNRLVLPVFYNVDPSDVRHLKKSFGEAMAKHEERFKNDMNKVLKWKKALHQVANLSGYHFNDGDGYEHKFIRDIVENISRKVRFVPFHVADYPVGLESRVPEVISLLKMDSNDRVHMVGIHGIGGIGKTTLALAVYNLIANNFEGVCFLENVRENSNKYGLVHLQNILLSKIIGKDEVHILGVNEGTSQVQQRLCQKKVLLVLDDVDDCRQLQAVAGKLDWFGPGSRVIITTRDTHLLKCHGVQDTYEVHDLNEDDSSQLLIKKAFENDNVSPIYTDVLNRAIAYASGHHWLWK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241813g00002 408 MobiDBLite consensus disorder prediction 1 21 - -
Stsc241813g00002 408 Gene3D - 194 359 IPR027417 -
Stsc241813g00002 408 Pfam TIR domain 29 196 IPR000157 GO:0007165
Stsc241813g00002 408 PRINTS Disease resistance protein signature 231 246 - -
Stsc241813g00002 408 PRINTS Disease resistance protein signature 307 321 - -
Stsc241813g00002 408 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 403 IPR044974 GO:0006952
Stsc241813g00002 408 SMART till_3 29 169 IPR000157 GO:0007165
Stsc241813g00002 408 Pfam NB-ARC domain 214 402 IPR002182 GO:0043531
Stsc241813g00002 408 Gene3D - 28 193 IPR035897 -
Stsc241813g00002 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 402 IPR027417 -
Stsc241813g00002 408 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 198 - -
Stsc241813g00002 408 ProSiteProfiles TIR domain profile. 28 196 IPR000157 GO:0007165
Stsc241813g00002 408 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 172 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241813g00002 Stsc-Chr241813 803 3188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241813g00002 24 375 WRKY Transcription Factor Family AT4G12020 29.096 4.00e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241813g00002 - - aip:110272157 557.755