Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241812g00007 ATGGAATTAAGTGGCACCATTGATATAGATTCTCTTTCAGAGTTATCCATTTTGAACAGCTTTAGTGTGATTAACAACAACTTTGAGGGTCTGATTCCGGAGTTCAAGAAGCTTGAGAGGCTAAGGGGATTGTTTCTTTCCAAGAACAAATTCTCCGGCGGGATTCGCGACGATGCGTTCGACGGAATGAGGAGGCTGAAGAGGGTGTTCTTGGCGGAAAATGATTTTAGTGGACATATTCCTAGCTCTCTTGCTCAATTGCCAAGGCTTTTGGATGTGAACTTGCATGATAATAGATTTGATGGTAACATACCTGAATTTCAGAAGAGTGATTTTAGGGTTTTTGATTTATCAAACAATCAATTGGAGGGTCCAATTCCTGAAAGCTTGAGCAATATGGATCCAAGTGCATTTGCTGCACTCTTTCTAATCCGAAACCGCAAGAGAAAAGCCAAAAACCCTAATCCTGTAGAGGCAGTTGCATCAAAACCTCAAAGTAGCATTGCGATTTCAAGTGAGGAGGCCAAAGCATCCATGGAGGCTAGGGCATCCATGGAGCCAAGCATATCAATTGAAACCAAATCTATTGATGTGGTTGCGGTCGAGGCTAAGGCTGCGACGACAACTGTATTACCCATTCAAAATATTGAAGACGGCGGGGGTGGGGCAGGAGGAGACTTTAACTTTGTTAGAGAAGATAGAGAGGTTTTTGATTTGCAGTATCTGCTAAGGGCCTCGGCCGAGGTCCTTGGTAGTGGAAGCTTCGGATCAACCTACAAAGCTTTGGTTTCGAGTGGTCAAGTTGTGGTGGTGAAGAGGTTCAAGAACATGAACAAGCTTGGGAAACAAGAATTCTTTGAGCACATGAGAAGGGTTGGGAGGTTGACACACCCTAATGTGCTTCCTCTTATTGCATTCTACTATGGAAAAGAAGAGAAGCTCTTGGTCTATGACTTTGCTCAAAATGGTAGCTTGGCTAGTCATCTTCATGGTAAACGAAATTTAGGGTTGGATTGGCCAACTCGTTTAAAGATCATAAAAGGAGTAGCAAGAGGCTTAGCATACTTATATAGAGAATTCCCAGACCAAAAGCTACCCCATGGACACCTCAAATCCTCCAATGTTTTGTTGGATCATACATACAAGCCTCTTTTAACAGAATACCAACTCGTGCCAGCAATAAACAAAAACCATGCCCAACAATTCATGGCGGCATTTAAGTCACCCGAAGCAAGCCAGTACGACAGTCCCACTCACAAGACTGATGTGTGGTGCCTCGGGATCCTTATATTAGAGTTACTGACTGGAAAGTTTCCTGCAGATTATGCGAGGCACGGAAAAAATGCTAGCGAAGAGCTAGAGACATGGGTTAAGTCTATTGCGAGTGGTGAGGTGCTTGATAAGGACATGGTAGGAGGGAGCAATGGTCAAGGAGAGATGTTGAAGATGTTGAGGATTGGAATGGGGTGTTGTGAGTGGGATGAGGGGAGTAGGTTGGATTGGAATGAAGCTGTAGCCATGATTGAAGAGGTAAAAGAGAAGGATAATATGGAAGATGAATCTTCTGGCTTTAGTGAGTGGGATTTGTCCTTTTATTCAGAAACTCTCTAG 1611 0.4358 MELSGTIDIDSLSELSILNSFSVINNNFEGLIPEFKKLERLRGLFLSKNKFSGGIRDDAFDGMRRLKRVFLAENDFSGHIPSSLAQLPRLLDVNLHDNRFDGNIPEFQKSDFRVFDLSNNQLEGPIPESLSNMDPSAFAALFLIRNRKRKAKNPNPVEAVASKPQSSIAISSEEAKASMEARASMEPSISIETKSIDVVAVEAKAATTTVLPIQNIEDGGGGAGGDFNFVREDREVFDLQYLLRASAEVLGSGSFGSTYKALVSSGQVVVVKRFKNMNKLGKQEFFEHMRRVGRLTHPNVLPLIAFYYGKEEKLLVYDFAQNGSLASHLHGKRNLGLDWPTRLKIIKGVARGLAYLYREFPDQKLPHGHLKSSNVLLDHTYKPLLTEYQLVPAINKNHAQQFMAAFKSPEASQYDSPTHKTDVWCLGILILELLTGKFPADYARHGKNASEELETWVKSIASGEVLDKDMVGGSNGQGEMLKMLRIGMGCCEWDEGSRLDWNEAVAMIEEVKEKDNMEDESSGFSEWDLSFYSETL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241812g00007 536 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
Stsc241812g00007 536 Gene3D Transferase(Phosphotransferase) domain 1 320 528 - -
Stsc241812g00007 536 Pfam Protein kinase domain 247 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241812g00007 536 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 517 IPR046959 -
Stsc241812g00007 536 SUPERFAMILY Protein kinase-like (PK-like) 248 511 IPR011009 -
Stsc241812g00007 536 Gene3D Ribonuclease Inhibitor 1 153 IPR032675 -
Stsc241812g00007 536 Gene3D Phosphorylase Kinase; domain 1 231 319 - -
Stsc241812g00007 536 FunFam pollen receptor-like kinase 1 215 319 - -
Stsc241812g00007 536 ProSiteProfiles Protein kinase domain profile. 244 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241812g00007 536 SUPERFAMILY L domain-like 5 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241812g00007 Stsc-Chr241812 42029 44602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241812g00007 1 528 Receptor kinase-like Gene Family AT5G35390 46.073 5.85e-161 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc241812g00007 Pkinase 9.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241812g00007 - - ahf:112718333 885.56