Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241812g00003 ATGTCGCTGAATATGAAAACCCTAACCCAAGCGCTGGCGAAGACCGCGGCGGTCATAGAGAAAACGGTTCAGACGACGGTGCAGGAGGTCACTGGGCCCAAAGCCCTCCAGGACTATGAGCTTCTTGACCAGATCGGCTCCGCCGGGCCGGGCTTGGCATGGAGGTTGTACTCTGGCCGGGCCAGGGACCCCTCGCGGCAGCACCAGTACCCGGTCGTGTGCGTGTGGATGCTCGACAAGCGGGCCCTCTCTGAGGCCCGAATGCGGGCCGGGCTTACCAAGGCAGCCGAGGATTCGTTCCTGGATTTGATCCGCAAAGACGCTGCCAAGCTCGTGCGGCTAAGGCACCCCGGGGTGGTTCACGTGGTGCAGGCGCTTGATGAGAGCAAGAACGCCATGGCAATGGTCACCGAGCCTTTGTTTGCTTCGGTTGCTAATACTCTGGGAAATTTGGAAAATGTTCCCAATGTTCCTAAGGAGCTCCGGGGAATGGAAATGTCACTGTTGGAGGTGAAGCATGGTTTACTTCAGATGGCAGAGACGTTGGACTTTCTCCACAACCATGCTTATCTTGTTCATCGAGCTATATCACCCGAGAATATTCTTATTACTTTGAGTGGAGCATGGAAACTCAGTGGATTTGGTTTTGCAATTTCAGCTTCTGAGACAAATGGTGACTCAGCTAATCTGCATGCCTTCCATTATGCTGAATATGATGTTGAAGACTCTGTTTTACCACTTCAGCCATCACTTAATTACACTGCTCCTGAGTTGGTGAGGAGCACTGCGCCTTCGGCAGGCTGGTCTTCTGATATTTTCAGTTTTGGATGTGTTGCCTACCATTTAATTGCTCGGAAATCTTTGTTTGACTGCCACAACAATGTGAAGATGTATACAAACACATTGACTTACTTATCCAGTGACGCTTTCTCATCTATCCCACCGGAACTGGTTCATGACCTGCAAAGGATGATTTCTCCAAATGAGTCTTCCAGGCCAACAGCAATGGATTTCACAGGCTCTCCATTTTTTCGGAGTGACGCTAGATTGCGTGCTTTGCGGTTTCTCGATCACATGCTTGCGAGAGATAACATGCAGAAGTCTGAGTTCTTAAAAGCGTTGTCAGACATGTGGAAAGATTTTGATTCCCGTGTATTGCGTTACAAGGTCCTTCCACCACTTTGTGCAGAACTACGGAATGTTGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCAGAGTCTCAGGACAAGAATGATTTTGAGAATGCAACACTTCCAGCCCTTGTACCTGTCCTGAGTAGTGCTTCTGGTGATACGCTGTTACTACTTGTGAAGCATTCTGAGCTTATAATAAACAAGGCTAGCAAAGAGCATTTAATTTCACATGTTCTTCCAATGATTATTCGGGCCTATGATGATACTGATGTTCGTTTACAAGAGGAGGTCCTGAAAAAATCTGGGTCTCTTTCCAAGCAACTTGATGCCCAGCTGGTGCAACAAGTGATTTTACCCCGTGTCCATGGGTTAGCACTTAAAACAACAATTGCAGCGGTTAGAGTGAATGCTTTCCTTTGCCTAGGAGAAATGGTTAGCAGACTTGATAAACCTGCTGTCTTGGACATCTTACAAACCATTCAGCGGTGTACTGCTGTTGACCATTCTCCTCCAACCCTTATGTGTACCCTCGGGGTTGCAAATTCTATTTTTAAGCGGTTTGGTGTAGAATTTGTTGCTGAACATGTTCTTCCATTAATTGTGCCCCTATTGACTGCACAACAATTAAACGTCCAGCAGAAGATTGAAGAGATGCGTGGAGTAGCTGTGACTGGTTCTGGTATCCCAGAGGCAAAAGCATCTTCTCCCGTGGTTAATGGACTTCAAACTGAACCACCAAGGGTGAGTAGCAACACTGTTGCTTCTTCAACCAAAAGCAGCTCCCCTTGGGACGAAGATTGGGGTTCCACAACAAAGGGAACTACCGCAGCTGTACAGAATTCTATTAACACATCCACTCAATCTGTGCTCAGCAACCCTATTGGCCATTTAACATCTTCACAAGATAATTTGCCATCATCTGCTGTTTCTAATCAGCAGGCAAGCAATTCTTGCCCCTCAGTAGATATAGAGTGGCCACCTCATATTGATCCCTTCGCCAATTGGCCTCCACGTCCTAGTGGCTCAACAGGTGGATCTGGAATATCCAACAATGGTACGTTTGGAACCCCAATGAATAAGATGACAAGCACTTCAAGCAATAAGGGTCTCCCAATGAGCAACAATGGGAACAGTATGAGCATTTCGTCCACCGGTAGCCTTAATGGTGGTTTTCAACCTCAGAATTCTATTGGGTTCCAAAAACAGAGTCAACAGTTGCCTGCGTCGACTGCTTCATATAACAAGTCAACAGATCTCGGTTCAATCTTTGCTTCCAACAAGAATGAGCAAAGTGCACTTAGACTCGCACCACCTCCTTCAACCACAGTGGGTAGAGGAAGAGGCCGAGGAAGAGGGGCTCCCTCAACCACTAGGCCCTCTCAGACCAGGTCAAATTCCGAGCAGCCACCTCTTATGGATTTGTTGGGGTAG 2595 0.4748 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKALQDYELLDQIGSAGPGLAWRLYSGRARDPSRQHQYPVVCVWMLDKRALSEARMRAGLTKAAEDSFLDLIRKDAAKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNLENVPNVPKELRGMEMSLLEVKHGLLQMAETLDFLHNHAYLVHRAISPENILITLSGAWKLSGFGFAISASETNGDSANLHAFHYAEYDVEDSVLPLQPSLNYTAPELVRSTAPSAGWSSDIFSFGCVAYHLIARKSLFDCHNNVKMYTNTLTYLSSDAFSSIPPELVHDLQRMISPNESSRPTAMDFTGSPFFRSDARLRALRFLDHMLARDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFENATLPALVPVLSSASGDTLLLLVKHSELIINKASKEHLISHVLPMIIRAYDDTDVRLQEEVLKKSGSLSKQLDAQLVQQVILPRVHGLALKTTIAAVRVNAFLCLGEMVSRLDKPAVLDILQTIQRCTAVDHSPPTLMCTLGVANSIFKRFGVEFVAEHVLPLIVPLLTAQQLNVQQKIEEMRGVAVTGSGIPEAKASSPVVNGLQTEPPRVSSNTVASSTKSSSPWDEDWGSTTKGTTAAVQNSINTSTQSVLSNPIGHLTSSQDNLPSSAVSNQQASNSCPSVDIEWPPHIDPFANWPPRPSGSTGGSGISNNGTFGTPMNKMTSTSSNKGLPMSNNGNSMSISSTGSLNGGFQPQNSIGFQKQSQQLPASTASYNKSTDLGSIFASNKNEQSALRLAPPPSTTVGRGRGRGRGAPSTTRPSQTRSNSEQPPLMDLLG 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241812g00003 864 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Stsc241812g00003 864 SUPERFAMILY ARM repeat 354 603 IPR016024 -
Stsc241812g00003 864 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 37 852 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 727 801 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 676 706 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 624 663 - -
Stsc241812g00003 864 Gene3D - 348 611 IPR011989 -
Stsc241812g00003 864 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241812g00003 864 CDD PK_SCY1_like 45 346 - -
Stsc241812g00003 864 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241812g00003 864 Gene3D Transferase(Phosphotransferase) domain 1 146 347 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 725 801 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 816 864 - -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 842 857 - -
Stsc241812g00003 864 SUPERFAMILY Protein kinase-like (PK-like) 34 347 IPR011009 -
Stsc241812g00003 864 MobiDBLite consensus disorder prediction 620 663 - -
Stsc241812g00003 864 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241812g00003 Stsc-Chr241812 9174 16555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241812g00003 104 349 CBL-interacting serine-threonine protein kinases AT2G26980 26.000 3.82e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Stsc241812g00003 Pkinase 1.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241812g00003 K17541 - gmx:100796211 1292.33