Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241810g00003 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTAATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAATTGTGCGTGCCTCAGTTACGTCTTACAGAACTTTCTGAATGCGTATGCATCAATATTCCGTAGAGGGGAAATGGAGGCAATTCCTTCATCTATACAGGGGGCAGCATCTATGATTACCACAGCATCACTTGATAATTCTTTATCTGACATGTACCGCTCTCCTCCAAGGCCAATGCCTTACGATGCAGACCCAAGGCACTTCCGCTCCCAGCGTGATGGACTAGTTTCACGACGTGAGAAGGGTTCAAGTCACGCGAATGATGAGGCAGAACCTCTAAGAGGTGATCTAGATGAGGACGACTCTCAATCTTTAACCTCAAGCAACAAATGGCATGAATGTGCCAGTGAGGATGGATCCAAAGAACACCGTTCTAAGTCTTCAACAAGGCTTTCATCAGCAAAACCTACGACTGGAGTTGGAATTGTCTATTCGTCATCAGAAGAGGAGGATTGCTGTCCAACTTGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGCGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 687 0.4338 MGSVCCCLSANDFEDYMNPNSPVYRNCACLSYVLQNFLNAYASIFRRGEMEAIPSSIQGAASMITTASLDNSLSDMYRSPPRPMPYDADPRHFRSQRDGLVSRREKGSSHANDEAEPLRGDLDEDDSQSLTSSNKWHECASEDGSKEHRSKSSTRLSSAKPTTGVGIVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241810g00003 228 MobiDBLite consensus disorder prediction 72 165 - -
Stsc241810g00003 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 225 IPR013083 -
Stsc241810g00003 228 Pfam RING-H2 zinc finger domain 172 218 IPR024766 GO:0008270
Stsc241810g00003 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 226 - -
Stsc241810g00003 228 SUPERFAMILY RING/U-box 173 225 - -
Stsc241810g00003 228 MobiDBLite consensus disorder prediction 85 131 - -
Stsc241810g00003 228 CDD RING-H2_AIRP1-like 174 222 - -
Stsc241810g00003 228 SMART ring_2 178 218 IPR001841 -
Stsc241810g00003 228 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
Stsc241810g00003 228 MobiDBLite consensus disorder prediction 139 154 - -
Stsc241810g00003 228 FunFam E3 ubiquitin-protein ligase At3g02290-like 155 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241810g00003 Stsc-Chr241810 4058 8123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241810g00003 1 226 C3H Transcription Factor Family AT5G38895 53.982 7.67e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241810g00003 - - ahf:112797939 429.869