Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241810g00002 ATGGAGGCAATTCCTTCATCTATACAGGGGGCAGCATCTATGATTACCACAGCATCACTTGATAATTCTTTATCTGACATGTACCGCTCTCCTCCAAGGCCAATGCCTTACGATGCAGACCCAAGGCACTTCCGCTCCCAGCGTGATGGACTAGTTTCACGACGTGAGAAGGGTTCAAGTCACGCGAATGATGAGGCAGAACCTCTAAGAGGTGATCTAGATGAGGACGACTCTCAATCTTTAACCTCAAGCAACAAATGGCATGAATGTGCCAGTGAGGATGGATCCAAAGAACACCGTTCTAAGTCTTCAACAAGGCTTTCATCAGCAAAACCTACGACTGGAGTTGGAATTGTCTATTCGTCATCAGAAGAGGAGGATTGCTGTCCAACTTGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGCGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 540 0.45 MEAIPSSIQGAASMITTASLDNSLSDMYRSPPRPMPYDADPRHFRSQRDGLVSRREKGSSHANDEAEPLRGDLDEDDSQSLTSSNKWHECASEDGSKEHRSKSSTRLSSAKPTTGVGIVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241810g00002 179 FunFam E3 ubiquitin-protein ligase At3g02290-like 106 176 - -
Stsc241810g00002 179 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 11 177 - -
Stsc241810g00002 179 SUPERFAMILY RING/U-box 124 176 - -
Stsc241810g00002 179 ProSiteProfiles Zinc finger RING-type profile. 129 169 IPR001841 -
Stsc241810g00002 179 SMART ring_2 129 169 IPR001841 -
Stsc241810g00002 179 MobiDBLite consensus disorder prediction 23 116 - -
Stsc241810g00002 179 MobiDBLite consensus disorder prediction 90 105 - -
Stsc241810g00002 179 MobiDBLite consensus disorder prediction 36 82 - -
Stsc241810g00002 179 Pfam RING-H2 zinc finger domain 123 169 IPR024766 GO:0008270
Stsc241810g00002 179 CDD RING-H2_AIRP1-like 125 173 - -
Stsc241810g00002 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241810g00002 Stsc-Chr241810 4058 8123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241810g00002 3 178 C3H Transcription Factor Family AT5G15790 58.333 2.34e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241810g00002 - - ahf:112797939 333.183