Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241809g00008 ATGTCAATGGGGAAGTGGTTGACACGAAGACAAGCACATCTGTTACGGGCCCAACAGGGTATTCCTATATCTGAATACGGGGTGCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGAACCAAGATGCTGCTGCATATCATCCCGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTAAAGCTTTAATTCAGGAACTCCCAAGGTTCAGCCTGAAGGCTGTTCCAACTGATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCGTGAAGGCAATGAGGTCCGTGGTCTACCTTGTGCTCACAATTTTCATGTTGAATGCATTGACGAATGGCTTCAGCTGAATGTGAAATGTCCTCAGTGTCGTTGCTCAGTTTTTCCGAATCTTGATCTTAGTGCTCTGTCCAATATCCGTACCGAATTTCAGCAGACTTCTGAGAGTACTGTTGGGACTTCAACCAGATATGTACAACTGCAACCTTCTAGCCAGAGTTACCTGTTGACATTACAAGGGCTTGTGCATCCAGTGCATGCTGAAATTGCAGGGCCAAATGGGGAGGCAGACATCGCCTTAGAAAATGCCGAAAATGGTGTTTTACCTCTTACAACAAGAAATGTGTCTAACCGGTGA 666 0.461 MSMGKWLTRRQAHLLRAQQGIPISEYGVLVEMIRVPDWAFEAAGQESRGMNQDAAAYHPGLYLTPAQREAVKALIQELPRFSLKAVPTDCSECLICLEEFREGNEVRGLPCAHNFHVECIDEWLQLNVKCPQCRCSVFPNLDLSALSNIRTEFQQTSESTVGTSTRYVQLQPSSQSYLLTLQGLVHPVHAEIAGPNGEADIALENAENGVLPLTTRNVSNR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241809g00008 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 139 IPR013083 -
Stsc241809g00008 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 217 IPR044793 GO:0004842|GO:0010182
Stsc241809g00008 221 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Stsc241809g00008 221 SMART ring_2 93 133 IPR001841 -
Stsc241809g00008 221 Pfam Ring finger domain 92 134 IPR001841 -
Stsc241809g00008 221 SUPERFAMILY RING/U-box 74 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241809g00008 Stsc-Chr241809 64357 68399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241809g00008 1 219 C3H Transcription Factor Family AT3G47990 67.873 7.19e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241809g00008 K16284 - gmx:100812016 363.229