Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241809g00007 ATGTTTGTTGACAATGGGCTTGCTTCTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGATTGTCCTTTCAATCCTTGCATTGCTTCTATATCCATTTCTTTGGGTTTGGACTATAATTGGTTCTTTGTGGTTCATCAGTTCCAAGACTTGTTTGAATGGAGATGGTAAAAGATATGGCTTTCTCATCTGGTTGCTTTTTAGCTACTGTGGACTCATTTGTATTGCTTGCATGTCAATGGGGAAGTGGTTGACACGAAGACAAGCACATCTGTTACGGGCCCAACAGGGTATTCCTATATCTGAATACGGGGTGCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGAACCAAGATGCTGCTGCATATCATCCCGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTAAAGCTTTAATTCAGGAACTCCCAAGGTTCAGCCTGAAGGCTGTTCCAACTGATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCGTGAAGGCAATGAGGTCCGTGGTCTACCTTGTGCTCACAATTTTCATGTTGAATGCATTGACGAATGGCTTCAGCTGAATGTGAAATGTCCTCAGTGTCGTTGCTCAGTTTTTCCGAATCTTGATCTTAGTGCTCTGTCCAATATCCGTACCGAATTTCAGCAGACTTCTGAGAGTACTGTTGGGACTTCAACCAGATATGTACAACTGCAACCTTCTAGCCAGAGTTACCTGTTGACATTACAAGGGCTTGTGCATCCAGTGCATGCTGAAATTGCAGGGCCAAATGGGGAGGCAGACATCGCCTTAGAAAATGCCGAAAATGGTGTTTTACCTCTTACAACAAGAAATGTGTCTAACCGGTGA 921 0.4441 MFVDNGLASGMGLDFGWQQRYARFCGRVIVLSILALLLYPFLWVWTIIGSLWFISSKTCLNGDGKRYGFLIWLLFSYCGLICIACMSMGKWLTRRQAHLLRAQQGIPISEYGVLVEMIRVPDWAFEAAGQESRGMNQDAAAYHPGLYLTPAQREAVKALIQELPRFSLKAVPTDCSECLICLEEFREGNEVRGLPCAHNFHVECIDEWLQLNVKCPQCRCSVFPNLDLSALSNIRTEFQQTSESTVGTSTRYVQLQPSSQSYLLTLQGLVHPVHAEIAGPNGEADIALENAENGVLPLTTRNVSNR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241809g00007 306 Pfam Ring finger domain 177 219 IPR001841 -
Stsc241809g00007 306 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Stsc241809g00007 306 SMART ring_2 178 218 IPR001841 -
Stsc241809g00007 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 224 IPR013083 -
Stsc241809g00007 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 302 IPR044793 GO:0004842|GO:0010182
Stsc241809g00007 306 SUPERFAMILY RING/U-box 159 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241809g00007 Stsc-Chr241809 64357 68399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241809g00007 1 304 C3H Transcription Factor Family AT3G47990 69.608 5.48e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241809g00007 K16284 - gmx:100812016 515.768