Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241808g00012 ATGAAGCAACAATCATCAAAACCAAAATGGAGGCCATTCACAACAAATTGTTGCTCGACAGAGAGCCAAACCATATTCACAGGCTTCAGCAAATGCAAGCCGTCACGCTCCGATTTATCGAAGGACGTGGCGGCGTTACCGTCTTTTAGAAAGCTATCTTTTTCGGACCTTAGCCGTTCGTCATCCATAAGGATCAATGAGGAGCTTTCGCTGTCGTTCGGGCCGGATTTGTATGACTTTCAACTGAGTGAATTGAGAGCCATAACACAAAATTTCTCGAGCAATTTCTTGCTTGGTGAGGGTGGGTTTGGAACAGTGCATAAAGGGTATGTGGATGATAGTTTGAGGCAGGGTTTGAAGTCTCAACCTGTTGCTGTTAAGCTTCTTGACATTGAAGGATTACAAGGACACCGTGAATGGCTTGCAGAAGTGATATTCCTTGGGCAACTAAGGCACCCCAATTTGGTTAAGTTGATTGGTTACTGTTGTGAGGATGAAGAACGCTTACTCGTCTATGAATTCATGCCACGTGGAAGCTTGGAGAATCACTTGTTCAGAAGGCTAACATCACTTCCATGGGGAACAAGATTAAAAATTGCAATAGGTGCTGCTAAAGGACTTTCTTTCTTGCATGGAGCTGAGAAGCCTGTCATTTACAGAGACTTCAAGACTTCCAATGTCTTGCTTGATTCAGATTTCACAGCAAAACTCTCTGACTTTGGATTAGCTAAAATGGGACCAGAGGGATCAAACACACATGTTTCCACCAGAGTTATGGGTACCTATGGATATGCAGCCCCTGAATACATCTCAACAGGGCACTTGACCACAAAAAGTGACGTGTACAGTTTCGGAGTAGTCCTGTTAGAACTGCTTACAGGAAGGAGAGCAATGGACAAAACAAGACCAAAGACAGAGCAAAGCCTTGTGGATTGGTCAAAGCCATACTTAAGGAGCAGTAGGAGGTTGAGGTACATAATGGATCCAAGGCTTCTAGGGCAATATTCTGTTAAAGGTGCAAAGGAAATGGCTGTTTTGGCATTGCATTGTGTGAGCATGAATCCTAAAGACAGGCCAAGAATGGCAACAGTTGTTGACACTCTTGAGAGCCTGCAACAGTTTAAGGACATGGCCGTGACTAGCGGACACTGGCCGGCCGCGGCGTCGACCAAGTCCGCCAGAAATAATGGAGGTTCCAAGAATGTGAAGGGCAGAGGTGGTGCTAGTGCTAACCAAAAGAAACCACCTCCTCTAGTCCCAGCGAGAAAGACTTAG 1275 0.4541 MKQQSSKPKWRPFTTNCCSTESQTIFTGFSKCKPSRSDLSKDVAALPSFRKLSFSDLSRSSSIRINEELSLSFGPDLYDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYVDDSLRQGLKSQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMDKTRPKTEQSLVDWSKPYLRSSRRLRYIMDPRLLGQYSVKGAKEMAVLALHCVSMNPKDRPRMATVVDTLESLQQFKDMAVTSGHWPAAASTKSARNNGGSKNVKGRGGASANQKKPPPLVPARKT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241808g00012 424 Pfam Protein tyrosine and serine/threonine kinase 98 368 IPR001245 GO:0004672|GO:0006468
Stsc241808g00012 424 MobiDBLite consensus disorder prediction 382 424 - -
Stsc241808g00012 424 ProSiteProfiles Protein kinase domain profile. 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241808g00012 424 MobiDBLite consensus disorder prediction 385 399 - -
Stsc241808g00012 424 CDD STKc_IRAK 98 371 - -
Stsc241808g00012 424 ProSitePatterns Protein kinases ATP-binding region signature. 98 127 IPR017441 GO:0005524
Stsc241808g00012 424 FunFam Serine/threonine-protein kinase PBS1 175 383 - -
Stsc241808g00012 424 Gene3D Phosphorylase Kinase; domain 1 55 174 - -
Stsc241808g00012 424 Gene3D Transferase(Phosphotransferase) domain 1 175 385 - -
Stsc241808g00012 424 PANTHER OS01G0588500 PROTEIN-RELATED 56 372 - -
Stsc241808g00012 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Stsc241808g00012 424 SUPERFAMILY Protein kinase-like (PK-like) 71 369 IPR011009 -
Stsc241808g00012 424 FunFam Serine/threonine-protein kinase BIK1 58 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241808g00012 Stsc-Chr241808 67965 70816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241808g00012 80 410 Glycoside Hydrolase AT3G07070 48.368 3.62e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc241808g00012 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241808g00012 - - gmx:100814241 712.605