Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241808g00005 ATGCTTTCATTTCTGAAATATCTGCTTCTTGCAATTCCTCTAATGGCAGTAGTGATAATTCATCACTTGAAGAAGAAACAAAACAGTAGAAGAAGAACCACTCCACCAGGTCCAACACCACTTCCCATAATAGGCAACCTTCACCAACTCGACAGTTCCAACCTCCATGTCCAACTATGGAACCTCTCTAAGACCTACGGCTCCATTTTCTCCCTTCAAATCGGTTTCAAACCAGCCATAGTTATCTCCTCACCAGAGCTCGCAAAGGAGGTTCTCAAGGACCATGATCTTGAAGTTTCAAGCAGACCTCCCTCCTTGGGACCCAACAGACTCTCCTACAACGGTTTGGATTTGATCTTCTCTCCCTACAGCCACTACTGGAGAGAAATCAGGAAGATCTGCGTCCTCCGTTTGTTCAGCTCCAAGCGAGTCTCTGGATTCTACCACATCAGAAAATCTGAAGTGGAAAGAATGTTGTCCAAGATATCAGAGCACGTGAGTTCTTCTCAAGCTACCAATGTGAGTGAGATGTTAATGTCAGTTTCGAATTCTATAGTCTGCAGGACTGCGTTTGGAAGAAGGTATGACGAGGAAGGAGCAGAGAGGAGCATGTTCCATGGGTTGCTGAATGAGATCCAAGCTATATTTCTTGCTTTCTTTGTTTCGGATTATGTTCCTTTCATGGGTTGGGTTGATAAGGTGACTGGCTCGGTGGATCGTGTTGAAAAGACTTTCAAGGAATTGGATGGGTTTCTTGAAGGAGTAATTGAAGAGCATCAACGTGAACAAGATGAAAAGAAAGGAGAGGATAGGGATATAGTTGATGTGTTACTTCAACTGAAGAAGGAGGATAATTTGTCAATACAGTTAACCAAAGATCATATCAAAGCTGTTATCATGAACATGCTTGTAGCAGCATCAGATACAACTGCAGCCACAACAACTTGGATAATGACAGGACTGATGAAAAATCCAAGAGTGATGAAGAAAGCTCAAGAAGAAATTCGAAGTCTCTATGGAAAGAAAAAATTCATAGAAGATGAAGATATTCAAAAGCTAGTTTATCTCAAAGCAGTGATCAAAGAAACATTCAGATATTATGCACCTGCACCATTGGTGCCAAGAGAGTTCAATAAGAAGAGCAAAATAGCAGGGTATGAAATTGAGGCCAAGACTATAGTATATGTAAATGTCTTTGCCATCCATAGAGACCCTGAAACTTGGAATGATCCAGAAGTGTTTTATCCAGAGAGATTCATAGATAGACATGCCCATGTTAACTTCACCGGACAAGATTTCGAGCTGATTCCATTTGGCGCCGGACGAAGAATCTGCCCGGGGATATCACTCGGATCTGCATCTGTAGAGCTCATAACTGCCAATCTCCTGAATTCATTTGATTGGGAAATGCCTCAAGGGATGAAGAGGGAAGAAATAGACAATGAAGGACTTCCTGGACTTGCCATGCACAAGAAGAATCATCTTTGCTTGGTTGGCAAGAACCATGTCTGA 1512 0.422 MLSFLKYLLLAIPLMAVVIIHHLKKKQNSRRRTTPPGPTPLPIIGNLHQLDSSNLHVQLWNLSKTYGSIFSLQIGFKPAIVISSPELAKEVLKDHDLEVSSRPPSLGPNRLSYNGLDLIFSPYSHYWREIRKICVLRLFSSKRVSGFYHIRKSEVERMLSKISEHVSSSQATNVSEMLMSVSNSIVCRTAFGRRYDEEGAERSMFHGLLNEIQAIFLAFFVSDYVPFMGWVDKVTGSVDRVEKTFKELDGFLEGVIEEHQREQDEKKGEDRDIVDVLLQLKKEDNLSIQLTKDHIKAVIMNMLVAASDTTAATTTWIMTGLMKNPRVMKKAQEEIRSLYGKKKFIEDEDIQKLVYLKAVIKETFRYYAPAPLVPREFNKKSKIAGYEIEAKTIVYVNVFAIHRDPETWNDPEVFYPERFIDRHAHVNFTGQDFELIPFGAGRRICPGISLGSASVELITANLLNSFDWEMPQGMKREEIDNEGLPGLAMHKKNHLCLVGKNHV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241808g00005 503 Gene3D Cytochrome P450 19 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 SUPERFAMILY Cytochrome P450 35 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 Coils Coil 328 348 - -
Stsc241808g00005 503 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241808g00005 503 CDD CYP71-like 65 495 - -
Stsc241808g00005 503 PANTHER CYTOCHROME P450 71B11-RELATED 17 498 - -
Stsc241808g00005 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Stsc241808g00005 503 FunFam Cytochrome P450 83B1 22 498 - -
Stsc241808g00005 503 Pfam Cytochrome P450 35 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241808g00005 Stsc-Chr241808 15993 18141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241808g00005 8 503 Cytochrome P450 AT4G31500 45.382 4.26e-154 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241808g00005 - - gmx:100806470 660.218