Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241808g00004 ATGGGGTCTAGTGGCAGCAAAGCCAATTCTTCTTCTGCTTGCAGTTCATCGTCTTCTTCTTCTTCTTCGGGTAGTTTCAGAAAAGGTCGATCTAAGAGGCATAGAGGTTTCCCATCTTCTTGTTTGGGAACAACTTCTGGATCTCATGACAGTGATCATGAAGACCAGGTTTGTGATCAGAACAAAGTAAATGGAAGTGGGGTTGATATAGTATCGGATGAAGTGAAATCGAAATCCTTTAGAAAACTCAAGTATGATGATGAAATGCCTTCCAACATCGACCTCGACGAGTGGGATCACACGGCATCCAGAACCGGTAGCAGCTCTAACCATGCTTCTTCAACTCAGTCTTTGAATCCTTCAAGTAGATTCCTTTCTCGCTTTAGCTTCATTCCTGGCAACATAAGCTTCAGACTTAGCAGAACCACCAGTCTTGGCTCTTCAAGGCCTTGTCCTGTTTCTTCTGGAAGTCTCACCATATTTAACAGTGAAGATGAGCTTAATCCTCATCGAAGCCCCCCTGGAAGCTTGATTAATAGAAATGAAACTCGACAACGTAGAGAATTGCTTAATGCATCTTTTGGTAATCGAGTGCCTATTCAGTATCATGGAAGTGCCTCTACTGATTTTAGATCTAATGCGCCAGCTTTGGGATCCTTTGGTAACTTACCAAGCAGTCCAATAATTTCTCCTGTCGAGGATGTGATTAGAGATGGGGATGGTACAAGAGAAGTGGTGGATATGAACTTGTTTTCTCCAAGAGTTCATACGGAGGCAGAAAATGTTGAGACGAGACATACTGATAGACGAAATGGAGCTCGAGAACCTGTAGACCGAAATGTACGCTTCAGCCGAACTTTAAGTGTTGGAAGACTTCGAGATAGAGTACTCCGACGATCAACATTATCTGAGTTCACGTTTGGCCCTCTGCAACAGGAGAGGGAAGCAAGAGATGCTGGTTGGGATAGAGGAAGAGAAGTGGGGGAGAGGGATACAAGAGTGGCACAGACTAGTCAAAATGCTGTGAATTCTCCAACTACAATTTCTAGCTCCTCATTTGGTGTCCAAGACTTTGATGTTGAGACTTCAAGATCTAGAGAAACAAGGTATCAAGATCTGCTGGAACACAGGTCTAATTTCCTTGAACGGAGAAGAAGAATACGGTCTCAGGTTCGGGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAATCTCTCTGGCCATGATAGATCATGCATATTGTCTGGTCAGCACAGAAATGGTCGTTGTACATGCCGAAACAGTAGCCGTAATACGAATTCAACTGATGATACCAACGCTAGAGCGAGCATATCAAGGATTGTGATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTTGTTCTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGAAGTTGTGGAATCTTTGCCTGTGAAATTATACACAAAATGCCACAAACATCAAGAAGATGCTGTGCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTTCCTTGTCGCCATGAATTCCATAAAACTTGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCATTATGTAGAGGAGACATTTGTGTATCAGATACACTGCCGATGGAGAACTAA 1689 0.4364 MGSSGSKANSSSACSSSSSSSSSGSFRKGRSKRHRGFPSSCLGTTSGSHDSDHEDQVCDQNKVNGSGVDIVSDEVKSKSFRKLKYDDEMPSNIDLDEWDHTASRTGSSSNHASSTQSLNPSSRFLSRFSFIPGNISFRLSRTTSLGSSRPCPVSSGSLTIFNSEDELNPHRSPPGSLINRNETRQRRELLNASFGNRVPIQYHGSASTDFRSNAPALGSFGNLPSSPIISPVEDVIRDGDGTREVVDMNLFSPRVHTEAENVETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREARDAGWDRGREVGERDTRVAQTSQNAVNSPTTISSSSFGVQDFDVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRNSSRNTNSTDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKCHKHQEDAVQCYICLVEYEDGDSMRVLPCRHEFHKTCIDKWLKEIHRVCPLCRGDICVSDTLPMEN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241808g00004 562 SMART ring_2 507 548 IPR001841 -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 333 350 - -
Stsc241808g00004 562 FunFam Putative RING zinc finger domain superfamily protein 476 554 - -
Stsc241808g00004 562 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 561 - -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 99 120 - -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 1 26 - -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 102 120 - -
Stsc241808g00004 562 Pfam Ring finger domain 506 549 IPR001841 -
Stsc241808g00004 562 SUPERFAMILY RING/U-box 486 555 - -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 1 70 - -
Stsc241808g00004 562 MobiDBLite consensus disorder prediction 329 350 - -
Stsc241808g00004 562 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Stsc241808g00004 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 554 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241808g00004 Stsc-Chr241808 7927 11402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241808g00004 45 556 C3H Transcription Factor Family AT5G45290 48.519 4.60e-119 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241808g00004 - - gmx:100815830 808.135