Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241808g00001 ATGTTCTACAATCTCCCCATTCTTCAATTCTTTCAAGTTGCAAATAATCAATTCTCAGGCACAATTCCAATTTCTGTCACAAATGAGTCTTTACTACAAACACTTGATTTCGCGGGAAACCATTTTGTGGGACAAGTTCCAAGCCTAGGGAAGCTAACAAAACTCAGACTTCTAAGTGTATGTTCGAACAATCTAGGTGGATTTCCATCTAAGGATTTGAAGTTCTTGAAGCCATTAACAAACTGTACCAACTTGTACAGGCTTGTTATATGTGGCAATAACTTTGGTGGCCAGCTTCCAAATTACGTTGGTAATTTGTCTACACAACTAAGCGTTTTGCATTTTGGTTATAACCAAATATATGGAAAATTTCCTGCTGAGTTAGGAAATCTGGTTAACTTAACTCTCTTGGACATGCAACACTGCCGTTTTGATGGGAATATTCCAGCTACTTTTGGACAGTTTCAAAAGATTGGAATATTAGAGTTGAGTGAAAACAAGCTCTCAGGAGAGATTCCAGCCTTTATAGGCAACCTCAGCCAGTTGTATTTCTTGAATTTAGCAGACAATATGTTTGAAGGAAGCATTCCTTCAAGTATAGGAAACTGCCAGAAGTTACAACATGTTAATTTTTCCATGAACAATCTCAGTGGAACCATACCATCTGAGATTTTCAGCATTTCTTCCTTAACAACCTTATTAGACTTGTCACAAAACTCATTCAGTGGCAATCTATCTGATGAGGTGGGAAATCTAGAAAATCTCGATGTCCTGAAACTCTCTGAGAATAATCTAGTTGGAAACATTCCTACTAGCATTGCAAAGTGCCTAAGTTTGGAGTTCCTTTATTTGCAAGGGAACTCATTCTCTGGAACCATACCGTCCTCTATGGTTTCGCTGAAAGGTCTTCGAGAATTAGACATATCGCGAAACCATTTTTCTGGGTCGATTCCTGAAGGCTTGCAGAACATTTCACTAGAGTATCTCAACATCTCTTTCAACATGTTGGATGGTCAAGTACCAACAGGAGGAGTTTTCAGAAATGTGAGTGAGTTTGCAATTATTGGAAACAATAAGCTTTGTGGGGGTGTTTCAGAGCTTCATTTACCACCATGCCCTTCTGAAGCTAAGAAACCTAAGAGACATCACAATTTCAGGTTCATTGCAGTGATAGTTTGTGTGTGTGCTTTTTTCTTCCTCTTATCCCTTTTCCTAACCATTTATTGGATGAGGAAGAGAAGCAGGAAAATGTCTGATGATTCTCCAACAATCGACCAGCTGGCTAAGGTTTCATATCAAAGTCTACACAATGGAACAAATGGATTCTCAGAAGAAAATCTGATAGGGTGTGGAAGTTTTGGCTCTGTATACAAGGGAACTCATGCGTTAGAAGGAAGTGTTGTTGTTGTTGCCATAAAGGTCCTAAAGCTTCAAACGAAAGGTGCTGAAAAGAGTTTTGTTGCTGAGTGTAATGCACTGAGGAATGTCAGGCATAGAAATCTGGTGAAGATTTTAACATGTTGCTCAGGTACAGATTATAAAGGGCAAGAATTCAAGGCTTTGGTTTTTGAGTTCATGACAAATGGAAGCCTAGAAAGTTGGTTACATCCACCATCAACAGGAATTCCAAATCACACTCTGAACCTTGAGCAAAGGTTAAACATCATCAACGATGTGGCCTCAGCATTTCATTATCTTCACTATGAATGTGATCCAACTATTATCCATTGTGATTTAAAGCCAAGCAATGTTCTTCTGGATGATTTCATGGTAGCTCATGTAGCTGATTTTGGCTTAGCAAGACTAGTTGGGAAGAATATTGGAGAGTCTTCTATGCAAACAAGCTCAATTGGACTTAAAGGAACTTTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTATCAAGTGTGCATGGAAGGAGATATGTATAGCTTTGGAATTCTGATATTAGAAATGCTGACCGGAAAGAGACCCATGGATGAGATGTTCAAGGATGGTTACAATCTGCATAATTATGTTCAAGTTTCAATTTCAAGTAACGTTTTGCAGATTGTGGATCCTCGTATCCTTTCCAAGGGAAATCAACTGCATCCTAGCGTTGAAAATTGTTTGATTTCACTATTTAGAGTTGGACTGGCTTGTTCAGTGGAATTACCAAGTGAAAGAATGGCCATGGTTGATGTCATGAGAGAGCTTAATAGAATCAAAAGTTGTTTTCTTTCTGCTGAACTCATGGAAGAAGCAGATTAG 2250 0.3876 MFYNLPILQFFQVANNQFSGTIPISVTNESLLQTLDFAGNHFVGQVPSLGKLTKLRLLSVCSNNLGGFPSKDLKFLKPLTNCTNLYRLVICGNNFGGQLPNYVGNLSTQLSVLHFGYNQIYGKFPAELGNLVNLTLLDMQHCRFDGNIPATFGQFQKIGILELSENKLSGEIPAFIGNLSQLYFLNLADNMFEGSIPSSIGNCQKLQHVNFSMNNLSGTIPSEIFSISSLTTLLDLSQNSFSGNLSDEVGNLENLDVLKLSENNLVGNIPTSIAKCLSLEFLYLQGNSFSGTIPSSMVSLKGLRELDISRNHFSGSIPEGLQNISLEYLNISFNMLDGQVPTGGVFRNVSEFAIIGNNKLCGGVSELHLPPCPSEAKKPKRHHNFRFIAVIVCVCAFFFLLSLFLTIYWMRKRSRKMSDDSPTIDQLAKVSYQSLHNGTNGFSEENLIGCGSFGSVYKGTHALEGSVVVVAIKVLKLQTKGAEKSFVAECNALRNVRHRNLVKILTCCSGTDYKGQEFKALVFEFMTNGSLESWLHPPSTGIPNHTLNLEQRLNIINDVASAFHYLHYECDPTIIHCDLKPSNVLLDDFMVAHVADFGLARLVGKNIGESSMQTSSIGLKGTFGYAPPEYGMGYQVCMEGDMYSFGILILEMLTGKRPMDEMFKDGYNLHNYVQVSISSNVLQIVDPRILSKGNQLHPSVENCLISLFRVGLACSVELPSERMAMVDVMRELNRIKSCFLSAELMEEAD 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241808g00001 749 Gene3D Transferase(Phosphotransferase) domain 1 526 743 - -
Stsc241808g00001 749 FunFam LRR receptor-like serine/threonine-protein kinase EFR 413 525 - -
Stsc241808g00001 749 SUPERFAMILY Protein kinase-like (PK-like) 415 732 IPR011009 -
Stsc241808g00001 749 SMART serkin_6 442 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241808g00001 749 Gene3D Phosphorylase Kinase; domain 1 405 525 - -
Stsc241808g00001 749 ProSiteProfiles Protein kinase domain profile. 442 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241808g00001 749 Gene3D Ribonuclease Inhibitor 73 381 IPR032675 -
Stsc241808g00001 749 SUPERFAMILY L domain-like 2 143 - -
Stsc241808g00001 749 Pfam Protein kinase domain 443 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241808g00001 749 PANTHER OS04G0122200 PROTEIN 5 737 - -
Stsc241808g00001 749 ProSitePatterns Protein kinases ATP-binding region signature. 448 473 IPR017441 GO:0005524
Stsc241808g00001 749 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 526 744 - -
Stsc241808g00001 749 Pfam Leucine Rich Repeat 303 323 IPR001611 GO:0005515
Stsc241808g00001 749 FunFam LRR receptor-like serine/threonine-protein kinase EFR 71 378 - -
Stsc241808g00001 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Stsc241808g00001 749 SUPERFAMILY L domain-like 108 362 - -
Stsc241808g00001 749 Gene3D Ribonuclease Inhibitor 4 72 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241808g00001 Stsc-Chr241808 275 2610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241808g00001 5 742 Receptor kinase-like Gene Family AT3G47570 46.205 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc241808g00001 Pkinase 6.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241808g00001 - - aprc:113870110 941.414