Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241807g00001 ATGTGGGGAAAGTTGTTGATGAAATCCTTAGGGAAAAGGCTTCAAAGCCTTATTGTTAAATCAAATTGCACTAATTGTGGTAATAATCAACACAAGAGTAGTGATGAAGAGAATTGCAATGTTTGCTTTGAAGAAAGCAAAGAATGCAATTGTGTTCACAACACCAATCACAATAATAATTATACTTATAATAATAGTAGCAATATTGAAGGAGGTACCAATATGATGATGGAAACAAAAAATGATGCTTCTGATGAAGATGATGAAGCCAATAGCTCTTTTACTCATGCTGTCATCAACATGGTGGGGATGCTCATAGGTTTGGGGCAATTATCAACTCCATATGCTGTGGAACAAGGTGGCTGGGCATATTCCTCAACCTTACTCATAGGCCTTGGAGTCATGTGTACTTACACTTCACATATCCTCGGCAAATGCCTTCGCAGTTACCCAACAAAGCTAAGAAGCTACGCCGACATCGGCGGCCAAGCATTCGGCTCAAAAGGAAGGATACTAGTCTCAACATTCATATACATGGAGATCTTCATGGCTCTTATCTCCTACACTATCTCCCTACATGACAACATAGTAACCGTCTTCTTAGGAACCACTTTGAAGCTTCACTTCGAAAAGTTATCAACTCCACAACTACTAACTATTGTGGCTGTGTTGATTGCTCTCCCTACAATGTGGATAAGAAATCTTTCTTCAATTTCATTTCTTTCCACGGTTGGGATTCTCATGTCGGTTGTCATTTTCGTGTCGTTGGCGGCCGCCACGGTTTTCGGAGGTGTTCTCACTAATCATAGCATACCGGTTTTTCAGATGCATAATGTTCCTTCAATTTCTGGCCTTTTTCTTTTCAGCTATGGAGGACACATTGTTTTCCCTAATTTATATAAAGCTATGAAGGACCCTTCAAAGTTTACTAAGGTCTCCATTGTGAGCTTCACAATTGTGACAGCACTATACATGATAATTGGGTTCCTAGGTGCAAAAATGTTTGGTCCTAATGTGAATTCTCAGTTCACTCTAAGCATGCCACCAAAGCAAATCATAACAAAGGTTGCTCTATGGGCCACAGTGTTAACCCCCATGACCAAATATGCACTTGAATTTGCACCTTTTGCAATTCACTTAGAGCATAAGCTNNNNNNNNNNTCAATGAGTGGAAGGACAAAAATGGTGATTAGGGGTTGTGCAGGTTCAATCTTCCTTTTGATCATACTTGCACTTGCTCTTTCAGTGCCTTATTTTGAGCATGTTCTTAGCCTCACTGGCTCTCTAGTTAGTGCAGCAGTTTCTTTGATTCTGCCATGTGCTTTCTATCTCAAGATCTTCTGGGGTCAAATAGCAAAGTCCCATTTGGTCCTAAACTTTTTTCTCATCACATTAGGGTTCTTTCTTGGGGTGATGGGAACTATTTCATCATCAAGATCATTGGTGGAGAGTTTTCAAGCACATCACTGA 1470 0.3993 MWGKLLMKSLGKRLQSLIVKSNCTNCGNNQHKSSDEENCNVCFEESKECNCVHNTNHNNNYTYNNSSNIEGGTNMMMETKNDASDEDDEANSSFTHAVINMVGMLIGLGQLSTPYAVEQGGWAYSSTLLIGLGVMCTYTSHILGKCLRSYPTKLRSYADIGGQAFGSKGRILVSTFIYMEIFMALISYTISLHDNIVTVFLGTTLKLHFEKLSTPQLLTIVAVLIALPTMWIRNLSSISFLSTVGILMSVVIFVSLAAATVFGGVLTNHSIPVFQMHNVPSISGLFLFSYGGHIVFPNLYKAMKDPSKFTKVSIVSFTIVTALYMIIGFLGAKMFGPNVNSQFTLSMPPKQIITKVALWATVLTPMTKYALEFAPFAIHLEHKLXXXSMSGRTKMVIRGCAGSIFLLIILALALSVPYFEHVLSLTGSLVSAAVSLILPCAFYLKIFWGQIAKSHLVLNFFLITLGFFLGVMGTISSSRSLVESFQAHH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241807g00001 489 PANTHER AMINO ACID TRANSPORTER 83 474 - -
Stsc241807g00001 489 Pfam Transmembrane amino acid transporter protein 91 475 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241807g00001 Stsc-Chr241807 698 5034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241807g00001 39 489 Amino Acid or Auxin Permease AAAP Family AT5G16740 56.858 3.36e-159 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241807g00001 - - adu:107482339 680.633