Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00014 ATGGCTTCTTCTTCTTCTTCTTTAATCAAACATGATCTCTTCATCAGCTTCAGAGGAGAAGATATTCGCACCTCTTTTCTTAGCCATTTGAGAAAAGAACTGCACCGTAACTATATCGATTTCTTCATAGACGATGAAAAAATTCACCCTGGAGATGAGATTTCGTCCACACTTGTTCAGGCCATTGAAGAGTCTTCGATTTCATTGGTCATCTTTTCGGAAAACTATGCCTCTTCAGCTTGGTGCTTGAATGAACTTGTGAAAGTAATTGAATGCATGAAACAAGATAAAAGGATTGTTATACCTGTTTTCCACAACGTTCTTCCCTCTGATGTGCGATATCAGAAAAATTCTTTTAAGGAGGCTTTTGATAAACACCAACACAGATTCAAGGGAGACACGGCGAAGGTGCAAAGTTGGAGATTGGCTTTAAAGGAAGCTTCTGATTTATCTGGATTTCATTATCCATCATCCAAATATCTAGATGAATCTAAATTCATTGAAGAAATTGTGAAAGATATTTCCGAGAAATTGTCAAATATTTTCTCAACACAATCCAATGGTCTTGTTGGAATTGATGATAGTTTGAGAACTATTGAATCATTATTGGAAATTGAATCAAGAGAAGTCCGAATCATAGGGATTTGGGGGATGGGAGGAATAGGTAAAACTACTATTGCTGAGGTCTTATTTGACAAATATTCTTCTCAATATCAAGGCAGTTGTATGTTGAAAAATGTAAGAGAAGAATCACAAAAGTTTGGTGTGCCTTATATATGTGACAAACTTATCTCTGAGTTATTAGTGGGAGAAAGCCTTGTTTTGAAAGGATCATCCAAAGCAAGATCCACTTTTGTCCGGAGAAAGTTTAGTCGAAAAAAAGTTTTCATAGTGCTTGATGATATGGGTACAGTGGAGCAGTTTGAACACCTTGCTACACAATGGTTGGGACCAGGTAGTAGGATCATTGTAACTACCAGAAACAAGGATGTCCTTAGAAAGGTTCATGTGATATACGAGGTCAAGGGCTTGAGCTTTAAAAATTCCCTTAAGCTTTTTTGCTTGAATGCTTTTGACGAAGTCTATCCGAAAGCTGGATATGAAGAGGTTTCAAAAATGGCAGTGAATTATGCAAATGGTATTCCATTGGCTTTAAAAGTTTTGGGTTCTCTTTTATACTCTAAAGCCATAGAAGAATGGGGAAGTGGCTTGGCAAAAGTCAAGATTTATCCTAATGTAGACATTTTCAATGTCTTAAAGTTGAGTTATGATGGGCTAGATGAGTTAGAGAAGGAAATATTCCTTGACATTGTGTTTTTTTTCAAAGGAAAAGAAAAGGATGCTGTCATACCGTTTCTAGAATCGTGTGGTTTCTTTCCTGCTATTGGCATAGGCAACCTTTCACGTAAGGCTCTTATAACTATTTCAAAACATAATACAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGTCAAGAATCAATTAAAGAGCCAGGAAAACGTAGCCGCTTAAGTAACTCTGAGGATGTCTACAATGTATTGAATAATGATAAGGGAACAGACTCAGTTGAAGGCATTGTGTTGGACATGTCTCAAATTAAAAGAGATATACATTTAGATGCTGACACTTTTAAAAAGATGCCTAATATAAGGTTTCTCAAATTTTATGATTCATGGAGGCACAAAAAGTCAGCGAATGTGTACCTTTCTTCAACTCTTGAGACATTTCCAAATGAACTAAGATACTTGGAGTGGACTGGCTATCCTGTGAAGTCTCTTCCGCAAACATTTTGTGCTGAGAAGCTTGTTGAGCTTTGTATGCCAAATAGCCCAGTTTCTAAACTTTGGAATGGAGTTCAGGATCTTGTACATTTAAAGAAGATTAACCTTAGTGCATGCAAGCAGCTAGTGGAGCTTCCAGATTTTTCTCGGGCATCAAACCTTAAAGAAGTACGTCTCGATGATTGTGTAAGGATATGTCAACTTCATCCATCCATTTTATCCATCGACAAGCTTGAAACCTTGAGTCTTTATTGTTGCAAAAGCTTGAAGAGCCTTAAAGGAAAGAGTCATTTGAAATCTCTTAAAAAGGTCCATGTTCTTTACTGCTCAAGCTTGAAGGAATTTTCAGTGTCATCAGAGGAATTAACAAGGTTGGATTTCAATGGGACAATAATTGATACGTTGCACTCATCAGTTGGCCGTCTCAGCAAACTTGTACAGTTTGATCTCTGTAATGCGAGAGTTGAAACTCTTCCAAACGAACTGTGCCTCTTAGTATCCCTTGAGGAACTAAATCTTAAAGGTTGCAAACAGTTGACTGAACTCCCTCGGAACATGAAAGCCTTATCGCGGTTACAGAATCTCAACTTAACAGATTGTTGTAGCCTTCGATCTTTACCGGAGCTTCCACCGTCTATTCTACATTTATGTGCCACCAACTGCACGTCGCTGGAGAAATTATTCAAAGCAAAGGCAGTATTCAGTTTAAATCTAGTTTCTATTTCATTTGAAAACTGCAAGATGCTTGCTGATGAATCATTCTCAGAATATGTGCATCAACCAATGATGGGAGTAGCAATCAGAGATATATTGGGTGGGATGCTGCAATACATATCTAGTCCTCACTCTCATGGCTACCCTGAATCCAACAGCCACGTTTTTTATCCTGGAAGCGAGGTTCCATCATGGTTCAAATATCAGACACAAGGGAATTCATTAACTATTAACCTTGTGGATGAATCTCGTAAGCATCTAGTGGGTTTCATTTTGTGCTGTGTTGTTCATCATGCTCCACATCGAACAGAGTATTCTTCTACTCGCCCTGTTCGTTCTTCAGAACGCCATCCCGGAATCAGTTGTCAATTCGGTTCACGGTGTAGCAAACAAATTGCTAAGATGAGTAGTTGGAGCTCAGATCATGTTTGTATATGGTTTGGAGAAGTTGGTTATCACCATCGATTTCGTGACATGAATGTTACATTCAAATTCGAATGTGAACTTTATAAGGATGATTATTGGGAGTCCATAGATGGAATGCTACTCTATACGCCACGACAATGGGAGGTGATAGGTTGCGGGGTTTTCCCAGTATATGCCTCGGACATCCTGGATGTTTTTCAAAATGTGGATCAGGACTTGCACTTCTTTTTTGATAGATACCGCAACGGATACCCGTATCATATTGATCAAATAGTTTTCACTCTTGACCAAGTGAAAACAAGGGTGATTCACAAGATCCAAGAACAACAAAAAGAATTATCATTGAGAACCTTTTGTGATCCCGTTTCTGACAGATGGCTGAATCTTATCTTATTTTTTTTTTGGACTTGGCTAAATTTTATGTTTAAATCGATTTTCACTAAGAAAGAACAACAAAAAGAATTATCCTTGTGTACCTTTTGTGGGATTTGCAAGAAGGAAGAAGAAAAACAAGGGGAATTTTGGCCCCATGAAATTTGGCCCAAATATTCTGAAGAAGACGAAGAAGAGGATGAGATTTCGACAATAAAAGAAGAATCAGAAAAGATCCTGTTTGGAGATTTATATCCCTGGGAATACGACTCAAATGTTGTCAATTCCATCCAGATTAAAGAAAGTACCTCAGAGCTTCGATGA 3633 0.379 MASSSSSLIKHDLFISFRGEDIRTSFLSHLRKELHRNYIDFFIDDEKIHPGDEISSTLVQAIEESSISLVIFSENYASSAWCLNELVKVIECMKQDKRIVIPVFHNVLPSDVRYQKNSFKEAFDKHQHRFKGDTAKVQSWRLALKEASDLSGFHYPSSKYLDESKFIEEIVKDISEKLSNIFSTQSNGLVGIDDSLRTIESLLEIESREVRIIGIWGMGGIGKTTIAEVLFDKYSSQYQGSCMLKNVREESQKFGVPYICDKLISELLVGESLVLKGSSKARSTFVRRKFSRKKVFIVLDDMGTVEQFEHLATQWLGPGSRIIVTTRNKDVLRKVHVIYEVKGLSFKNSLKLFCLNAFDEVYPKAGYEEVSKMAVNYANGIPLALKVLGSLLYSKAIEEWGSGLAKVKIYPNVDIFNVLKLSYDGLDELEKEIFLDIVFFFKGKEKDAVIPFLESCGFFPAIGIGNLSRKALITISKHNTIEMHDLIEQMGREIVRQESIKEPGKRSRLSNSEDVYNVLNNDKGTDSVEGIVLDMSQIKRDIHLDADTFKKMPNIRFLKFYDSWRHKKSANVYLSSTLETFPNELRYLEWTGYPVKSLPQTFCAEKLVELCMPNSPVSKLWNGVQDLVHLKKINLSACKQLVELPDFSRASNLKEVRLDDCVRICQLHPSILSIDKLETLSLYCCKSLKSLKGKSHLKSLKKVHVLYCSSLKEFSVSSEELTRLDFNGTIIDTLHSSVGRLSKLVQFDLCNARVETLPNELCLLVSLEELNLKGCKQLTELPRNMKALSRLQNLNLTDCCSLRSLPELPPSILHLCATNCTSLEKLFKAKAVFSLNLVSISFENCKMLADESFSEYVHQPMMGVAIRDILGGMLQYISSPHSHGYPESNSHVFYPGSEVPSWFKYQTQGNSLTINLVDESRKHLVGFILCCVVHHAPHRTEYSSTRPVRSSERHPGISCQFGSRCSKQIAKMSSWSSDHVCIWFGEVGYHHRFRDMNVTFKFECELYKDDYWESIDGMLLYTPRQWEVIGCGVFPVYASDILDVFQNVDQDLHFFFDRYRNGYPYHIDQIVFTLDQVKTRVIHKIQEQQKELSLRTFCDPVSDRWLNLILFFFWTWLNFMFKSIFTKKEQQKELSLCTFCGICKKEEEKQGEFWPHEIWPKYSEEDEEEDEISTIKEESEKILFGDLYPWEYDSNVVNSIQIKESTSELR 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00014 1210 Pfam TIR domain 10 189 IPR000157 GO:0007165
Stsc241806g00014 1210 Pfam NB-ARC domain 198 400 IPR002182 GO:0043531
Stsc241806g00014 1210 Gene3D - 344 427 IPR042197 -
Stsc241806g00014 1210 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 717 IPR044974 GO:0006952
Stsc241806g00014 1210 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 180 - -
Stsc241806g00014 1210 ProSiteProfiles TIR domain profile. 9 178 IPR000157 GO:0007165
Stsc241806g00014 1210 SUPERFAMILY L domain-like 557 847 - -
Stsc241806g00014 1210 Pfam C-JID domain 894 1038 IPR045344 -
Stsc241806g00014 1210 SMART till_3 10 150 IPR000157 GO:0007165
Stsc241806g00014 1210 FunFam Disease resistance protein RPS4 525 719 - -
Stsc241806g00014 1210 Gene3D - 181 340 IPR027417 -
Stsc241806g00014 1210 PRINTS Disease resistance protein signature 625 641 - -
Stsc241806g00014 1210 PRINTS Disease resistance protein signature 289 303 - -
Stsc241806g00014 1210 PRINTS Disease resistance protein signature 212 227 - -
Stsc241806g00014 1210 PRINTS Disease resistance protein signature 378 392 - -
Stsc241806g00014 1210 Gene3D - 9 180 IPR035897 -
Stsc241806g00014 1210 Gene3D Ribonuclease Inhibitor 695 841 IPR032675 -
Stsc241806g00014 1210 Gene3D Ribonuclease Inhibitor 529 694 IPR032675 -
Stsc241806g00014 1210 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Stsc241806g00014 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 437 IPR027417 -
Stsc241806g00014 1210 SUPERFAMILY "Winged helix" DNA-binding domain 414 519 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00014 Stsc-Chr241806 64564 70148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00014 6 817 WRKY Transcription Factor Family AT4G12020 35.344 9.06e-117 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00014 - - ahf:112728432 1553.11