Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00013 ATGGATTCATCTTCTTCCTCTTCATTAGATGTTCCCATAATCGAGCATGATCTCTTCATCAGCTTCAGAGGAGAAGACATTCGTACTAATTTTCTTGGCCATCTGCGAAAAGAACTGCACCGTAACCAGATCGATTTCTTTGTAGACGATGAAAAAGTTCACCCTGGAGATGACATTTCATCCAAGCTTCTTCAGGCCATTCAAGGATCTTTGATTTCATTAATCATCTTTTCGGAAAACTATGCCTCTTCAACTTGGTGCTTGAATGAACTTGTGAAAGTAATTGAATGCATGAAACAACATCAAAGGATTGTGATACCTGTTTTCTACAACGTTCTTCCCTCCGATGTGCGACATCAGAATAATTCTTTTAAGGAGGCTTTTGATAAATACCAACGCAGATTCAAGGGAGATACGACGAAGGTGCAAAGTTGGAGATCTGCTTTAAAGGAAGCTTCTAATTTATCTGGATTTCATTATCCATCGAAATCATCAAAATATCAAGATGAATCTAAATTTATTGAAGAAATTGTGAAAGATATTTTGGAGAAATTGTCAAATATTTTCTCAACAGAATCCACAGTTCTTGTTGGAATTGATGACATTTTTAGAAGTATTGAATCATTGTTGGCAATTGAATCAAGTGAAGTCCGAATCATAGGAATTTGGGGGATGGGAGGAATAGGTAAAACTACCATTGCCGAATTCTTATTTGACAAATATTCTTCCCAATATGAAGGCAGTCGTATGCTGAAAAATGTAAGAGAAGAATCACAAAAGTCTGGTGTGCCTCATTTATTTGAGAAACTTGTTTCTGAGTTATTGGAGGGAGAAAGTCTTCATTTGAAAGGATCATACAAAGCAAGATCCAGTTTTGTCCAGAGAAAGTTAAGTCGAAAAAAAGTTTTCATAGTCCTTGATGATATGGATACATTAGAACAGTTTGAACACCTTGCTACACAATGGTTGGGACCAGGTAGTAGGATCATTGTAACTACTAGAGACAAGCATGTCCTTGGAAAGGTTCATGGAATATATGAGGTCCAGGGCTTGAGCTTCGAAAATTCCCTGAAGCTTTTTTGCTTGAATGCTTTTGAGAAAGTCTATCCTGAAGCAGGATATGAAGAGGTTTCGAATATGGCAGTGAATTATGCAAATGGCATCCCATTGGCTTTAAAAGTTTTGGGTTCTTATTTATTCTCTAAAACCATAGAAGAATGGGAAAGTGCGTTGGCAAAACTCAAGATTTATCCTAATGTAGGCATTTGTAATGTGTTAAAGTTGAGTTATGATGGACTAGATGAGTTAGAGAGGGAGATATTTCTTGACATTGTATTCTTTTTCAAAGGAGAAAAAAAGGATGTTGTCATGCCATTTCTAGAATCGTGTGGTTTTTTCCCTGCTATCGGCATAGGCAATCTTTCTCGTAAAGCTCTTATAACTATTTCAAAGTATAATGAAATAGAAATGCATGACTTGATAAAACAAATGGGTCGAGAAATAGTCCGTCAAGAATCAATTAAAGACCCGGGAAGACGTAGCCGCTTGAGTAACACTGAGGATGTCTACAATGTATTGAATAATAATAAGGGAACAGACTCAGTTGAAGGCATTGTGTTGGACATGTCTGAAATTAAAAGAGATCTACATTTAGATGATGACACATTCAAGAGGATGCCTTATATAAGGTTTCTCAAATTTTACCATTCCGGGAGGGGTAGTCTTTTCCATTCCCGGAGGGGTACCACACCACCGAATGTGTATGTTTCTTCAACTTTGGAGTCATTTCCTAACGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTGTGAAGTCTCTTCCTCCATCGTTTTGTGCTGAGAAGCTTGTTGAGCTTTCTATGCCACGGAGCAAAGTTTCTAAACTTTGGAATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTTAATGAATGCTGGGAGCTAGTGGAGCTTCCAGATTTTACTAAGGCATCAAACCTTGAAGAAGTATACCTCAAGAATTGTGTAAGCTTGTGTGAACTTCATCCATCCATTTTATCCAGCGACAAGCTTGGAACCTTAAATGTTTATGGTTGCAAAGAGCTTAAGAGTCTTAAAGGCAAGATTCATTTGAAATCTCTTACGATCCTCGATGTTCGTAATTGCTCAAACTTGAAAGAATTTTCAGTGTCATCAGAGGAACTAACAAGTTTGGATTTCCATTGGACAATAATTTATAAGTTGCACTCATCAGTTAGCCGTCTCAGCAAACTTGTGGAGTTTGATCTATATGGTGTGAGAGTTGAAGCTCTTCCAGAAGAACTGTGTCTCTTAGTATCTCTTGAGAAGCTAAATCTTGAAGGATGCAAACAGTTGGTTGAACTCCCTCAAAATATGAAGGCCTTATCACGGTTACATCATCTCAACATAGCGGATTGCTGCAACCTTCGATCTTTACCAGAGCTTCCACCATCTATTAAACATTTATCTGCTAACAACTGCACATCACTGGAGAAATTATTCAATGCAAAGGCAGTTTTAAGTTTAAATCTGATATCTATCTCATTTGAAAACTGTGTGAGGCTTGATGATGATTCATTCTTAGAATATGTGCATCATCCAATGATGGGAGTAGCAATTAGAAAGATGTTGGGTTGGATGGTGGAACGTAGCTTTACTCATGCCAGTTCCAGATTTGTTTACGACCCTAGTATCTTTTATCCCGGAAGCAAGGTTCCATCATGGTTCAAATATCAGACAAGAAGGAGTTCGGTAACTGTTGAACTTCTTGAGGATGAATCTCATTATCTGGATAGGCTAGTGGGTTTCATTTTGTGCTGTGTTGTTCATCATATTCCTTCTCAAAGAGAGGCTCCTCGAAAGCAGCCTCCCATGATCCAATGTAGATGCGGCGATCTATGGCTTAGTAAAAGGAGTGCTGAAACAAGTGGGTTGAGCTCAGATCATGTTTGTATATGGTTTGAACAAGTTGGTGGTGAACATGGATTGCGTGACAAGCATGTTACTTTTAATTTCAAGACTTATTACGGATCATGGGCATCATTCATTGAGTTTAAAGAAGCATGGGAGGTGATAGGGTGCGGGGTTTGCCCAGTATATGCCTCAGACGTTCTGGATGCCTTTCAAAATGTGGATGCAGAGTTTAAGTTCTTTTATGATAGAGGCAGACACGAATGGCTAAATCTTGTTGAAGCATCTGTTTTCACTCTTGACCAAGTGAAAACACTGCTGATTCACAAGATGGAACAACAAAAGGATGAAGAAGACGAAGAAGAGGAGGAGGAAGAAGTGGAATTATGGTCCAAAGGCTCTTATCCCTTTGACCGTTTTACAGATTCTATTTGA 3369 0.3847 MDSSSSSSLDVPIIEHDLFISFRGEDIRTNFLGHLRKELHRNQIDFFVDDEKVHPGDDISSKLLQAIQGSLISLIIFSENYASSTWCLNELVKVIECMKQHQRIVIPVFYNVLPSDVRHQNNSFKEAFDKYQRRFKGDTTKVQSWRSALKEASNLSGFHYPSKSSKYQDESKFIEEIVKDILEKLSNIFSTESTVLVGIDDIFRSIESLLAIESSEVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSRMLKNVREESQKSGVPHLFEKLVSELLEGESLHLKGSYKARSSFVQRKLSRKKVFIVLDDMDTLEQFEHLATQWLGPGSRIIVTTRDKHVLGKVHGIYEVQGLSFENSLKLFCLNAFEKVYPEAGYEEVSNMAVNYANGIPLALKVLGSYLFSKTIEEWESALAKLKIYPNVGICNVLKLSYDGLDELEREIFLDIVFFFKGEKKDVVMPFLESCGFFPAIGIGNLSRKALITISKYNEIEMHDLIKQMGREIVRQESIKDPGRRSRLSNTEDVYNVLNNNKGTDSVEGIVLDMSEIKRDLHLDDDTFKRMPYIRFLKFYHSGRGSLFHSRRGTTPPNVYVSSTLESFPNELRYLEWSGCPVKSLPPSFCAEKLVELSMPRSKVSKLWNGVQDLVNLKRINLNECWELVELPDFTKASNLEEVYLKNCVSLCELHPSILSSDKLGTLNVYGCKELKSLKGKIHLKSLTILDVRNCSNLKEFSVSSEELTSLDFHWTIIYKLHSSVSRLSKLVEFDLYGVRVEALPEELCLLVSLEKLNLEGCKQLVELPQNMKALSRLHHLNIADCCNLRSLPELPPSIKHLSANNCTSLEKLFNAKAVLSLNLISISFENCVRLDDDSFLEYVHHPMMGVAIRKMLGWMVERSFTHASSRFVYDPSIFYPGSKVPSWFKYQTRRSSVTVELLEDESHYLDRLVGFILCCVVHHIPSQREAPRKQPPMIQCRCGDLWLSKRSAETSGLSSDHVCIWFEQVGGEHGLRDKHVTFNFKTYYGSWASFIEFKEAWEVIGCGVCPVYASDVLDAFQNVDAEFKFFYDRGRHEWLNLVEASVFTLDQVKTLLIHKMEQQKDEEDEEEEEEEVELWSKGSYPFDRFTDSI 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00013 1122 ProSiteProfiles TIR domain profile. 14 185 IPR000157 GO:0007165
Stsc241806g00013 1122 SUPERFAMILY "Winged helix" DNA-binding domain 422 526 IPR036390 -
Stsc241806g00013 1122 Gene3D Ribonuclease Inhibitor 526 710 IPR032675 -
Stsc241806g00013 1122 Gene3D Ribonuclease Inhibitor 711 854 IPR032675 -
Stsc241806g00013 1122 SUPERFAMILY L domain-like 556 861 - -
Stsc241806g00013 1122 Gene3D - 13 186 IPR035897 -
Stsc241806g00013 1122 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 731 IPR044974 GO:0006952
Stsc241806g00013 1122 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 187 - -
Stsc241806g00013 1122 FunFam Disease resistance protein RPS4 532 734 - -
Stsc241806g00013 1122 MobiDBLite consensus disorder prediction 1090 1122 - -
Stsc241806g00013 1122 Pfam NB-ARC domain 206 415 IPR002182 GO:0043531
Stsc241806g00013 1122 Gene3D - 350 434 IPR042197 -
Stsc241806g00013 1122 Pfam Leucine Rich Repeat 621 640 IPR011713 -
Stsc241806g00013 1122 Pfam C-JID domain 908 1045 IPR045344 -
Stsc241806g00013 1122 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Stsc241806g00013 1122 Pfam TIR domain 16 197 IPR000157 GO:0007165
Stsc241806g00013 1122 Coils Coil 1082 1106 - -
Stsc241806g00013 1122 Gene3D - 187 346 IPR027417 -
Stsc241806g00013 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 444 IPR027417 -
Stsc241806g00013 1122 SMART till_3 15 155 IPR000157 GO:0007165
Stsc241806g00013 1122 PRINTS Disease resistance protein signature 219 234 - -
Stsc241806g00013 1122 PRINTS Disease resistance protein signature 296 310 - -
Stsc241806g00013 1122 PRINTS Disease resistance protein signature 710 726 - -
Stsc241806g00013 1122 PRINTS Disease resistance protein signature 385 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00013 Stsc-Chr241806 58576 63582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00013 15 832 WRKY Transcription Factor Family AT4G12020 34.856 4.76e-114 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00013 - - ahf:112728432 1513.82