Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00010 ATGGAATCTTCTTCAAATACTCGGAGAATCAAATATGATGTGTTCATCAGTTTTAGAGGAGAAGATATTCGCACTGCTTTTCTTAGCCACTTGACAAAAGAATTCCGTCGTAACCAAATTGATTTCTTTATTGACGATGAAAAGCTTCATCCTGGGGATGAGATTTCATCCACACTACTTCAAGCAATTGAGGAATCATCCATTTCATTGGTCATCTTCTCGAAACGCTATGCTGCTTCAAGATGGTGTATGGAGGAGCTTGTGAAGATAATTCAATGCATGAAACAATATGAAAGGATTGTGATACCTGTCTTTTACAACATTGATCCTTCTGATGTCAGGCATCAGAAACGAACTTTTGCAGAGGCTTTTGATGTCCACAAAGAAAGATATGAGGTGGAACATATGCAGAATTGGAGATCCGTTTTAAAGGAGGCAGCAAATTTATCTGGAATTCATTATCCATCAAAATATAGAAATGAATCTGAACTCGTTGAAGAAATTGTCAAGCATGTTTCGGAGAAACTGTCACATCCGTTATCAAATGCATCCGAAAGCCTTATTGGAATGGATGAAAATTTTAAACGTATTCAACCTTTATTGGCAATCGAGTCTGATGAAGTTCAATTTCTTGGAATTTGGGGTATGGGAGGAATTGGTAAAACAACCATTGCCAAAGCAATATTTGACAGATATTCCTCTCGATATGAAGGTTGCTGCTTTCTACAAAATGTAAGAGAAGAATCAGAGAAGTTTAGTCCACATTACTTACATGAGAAACTTGTTTCTGAACTCCTTGAGGGGGAAAATCTCCTTGTGAAGGGATCAGCCCAAGCAAGATCTATGTATGTCAAGAGAAGGTTGAGTCGAAAAAAGGTTCTCATAGTGCTTGATGATGTGGATACGTTAGACAAGTTAGAGCATCTAGCAGGAGAACAAATCTGTTTGGGAGCAGGTAGTAGGATCATTGTAACTACTAGAGACGAGCAAATACTAATTGCTGCAAGAGTGCAACACATATACAATGTCCAGGAATTGAGCTTTGAAAGTTCCCTTAAGCTTTTTTGCTTGAAAGCCTTTCACCAAAGCTATCCTGAAAATGGATATGAAAAGCTTTCAGACATGGCAGTTCATTATGCTAAAGGAATTCCATTAGCCTTAAAAGTGTTGGGATCCTTTTTATGCTCAAGGAGTGCAGTAGCTTGGGAAAGTGCGCTAAGAAAACTCAAGACTCATCCTGATTCGAGCATTTTCAATGTGTTAAAGCTGAGTTATGATGGATTAGATGATTCAGAGAAGAACATATTCCTTGACATTGCATTCTTTTTCAAAGGAGAATACAAGGATAATGTCATAAGGTTTCTAGACTCTTGTGATTTCTTTGCAGACATTGGAATAGACACTCTTGAGCGTAAAGCTCTTATAACTATTTCCAACAATAGAATAGAAATGCATGACTTGATACAACAAATGGGGTGGGAAGTAGTTAGCAAAGAATCAAATAAAGATCCTGGAAAACTCACTCGGATAAATAGAACCGAAGATTTCTACAATTTATTGAAAAATAGCGAATCAAATGTGTGTGTTCCCACAACCCTGGAGCCGTTTTCTGCTAAACTCAGGTATTTGGAGTGGAATAGTTATCCTCTGAATTCTCTACCATCAAGGTTTTGTGCAGAGAAGCTTGTTGAAATTAGGATGCCTTACAGTGAAATTTCTAAACTCTGGGATGGAAAGCAGGATCTAGAGAATTTGACAGTGCTTGACCTTCGTGGATGTATAAAGTTGGTAGAGCTTCCAGATTTCAGTAAAGCAACAAAGCTTAAAACCATAGACCTTTGCTATTGTGAAAAACTATATCAACTTCATCCATCTATTTTATACATCCAAACACTTGAGCAATTGCATCTTAATGGTTGCACAGAATTGAAGAGTGTCAAAGGCAATGTGACGTCTCTTAAAGAACTTCATGCTAATAAATGTTCAAGCCTGGAGGAATTTTCAGTGTCTTCAGAGACAGTGACGAATTTGTGTTTCTGTTTTTCAAGAATTAAGAATCTCGCAGATGAATTCAGCTGCTTTATATCTCTTGAGGATCTTTGTCTTTGTGATTGCAGAGAGCTAATTGAGCTGCCACACAACATCAAAACCCTATCAAGTTTAAGGACTCTTGAGGTAAGAGGTTGTTGTGGTCTTCGATCTATACCAGAGCTTCCACCATCTATTCAAGTGTTTCGTGCTGATGGTTGCACATCACTGGAAAGAATATTCAGTTTGAAGGCAGTATTTAGTTTGAATAGGAGAAAGATCTCATTTGTAAATTGCGTGACATTGGAAGAGGAGTCAGTGAATGAAATTATGGAAGATGCACATCTCACAATATTCAGAAATGTTTTGTTGTGGTCAGAAGATCGAAACCTGATGAATTATAATCATTATCTTGACATGGATGGCACTTTGTGTTATCCTAACTATCTTGACGTGAAAGGTAGTGTTTGTTATCCAGGGTATAAAGTTCCAGAGTTGTTCAGATGTCAGACAGAAGAAGCATCATCCATAACAGTTGAACTTGATCAACCTTACTACCGATTGTTGGGTTTCTTCTTCTGTTGTGTTGTTTCTCATAAGTTACCTCCTCATTATCTTGACATGGATGGTGGTGTCAATATCAAGTGTGAATACCTCCACTTGGGACATGACATAAAGCACACATTTGTTTGTGAACGGCTATACTTTATTGGTGAAAGAAGATGCAATTCTGATCATGTTTTGATTTGGAATGATCCAATATGTAATGCTGATATATTGAGTAAAACGGGGTTCATTAGAGGATCTTATGGCAGTGATGATGATGAAAGCACTTGCAATGAAAAGATGTCATTCAGATTCAGTGTTGATAGACCTGGGAAAGGGAAGAGAGTGGAAGAAAGGGAAGAAGACGATGAAGATTGTTTTATCAAAGGCTGTGGGGTTTATCCAGTGTATGCCTCAACTGTCCTGGATGTCATTCATGAACTTGAATTGGAGTTCAAGTTGAATCCTCATCATGACTCCACCACAGGGATGGATCTCGAAGCATTGAAAAGTGCGATGATCCGGATGATTAGAGCAAAATCGATAATCCTCTGTGGATACGATAGTAGCAGTGACTCAGAAGAAGAAAGTTGCAGTGACACAGAAAAAGGAAGTAGCAGTGATTAA 3201 0.3802 MESSSNTRRIKYDVFISFRGEDIRTAFLSHLTKEFRRNQIDFFIDDEKLHPGDEISSTLLQAIEESSISLVIFSKRYAASRWCMEELVKIIQCMKQYERIVIPVFYNIDPSDVRHQKRTFAEAFDVHKERYEVEHMQNWRSVLKEAANLSGIHYPSKYRNESELVEEIVKHVSEKLSHPLSNASESLIGMDENFKRIQPLLAIESDEVQFLGIWGMGGIGKTTIAKAIFDRYSSRYEGCCFLQNVREESEKFSPHYLHEKLVSELLEGENLLVKGSAQARSMYVKRRLSRKKVLIVLDDVDTLDKLEHLAGEQICLGAGSRIIVTTRDEQILIAARVQHIYNVQELSFESSLKLFCLKAFHQSYPENGYEKLSDMAVHYAKGIPLALKVLGSFLCSRSAVAWESALRKLKTHPDSSIFNVLKLSYDGLDDSEKNIFLDIAFFFKGEYKDNVIRFLDSCDFFADIGIDTLERKALITISNNRIEMHDLIQQMGWEVVSKESNKDPGKLTRINRTEDFYNLLKNSESNVCVPTTLEPFSAKLRYLEWNSYPLNSLPSRFCAEKLVEIRMPYSEISKLWDGKQDLENLTVLDLRGCIKLVELPDFSKATKLKTIDLCYCEKLYQLHPSILYIQTLEQLHLNGCTELKSVKGNVTSLKELHANKCSSLEEFSVSSETVTNLCFCFSRIKNLADEFSCFISLEDLCLCDCRELIELPHNIKTLSSLRTLEVRGCCGLRSIPELPPSIQVFRADGCTSLERIFSLKAVFSLNRRKISFVNCVTLEEESVNEIMEDAHLTIFRNVLLWSEDRNLMNYNHYLDMDGTLCYPNYLDVKGSVCYPGYKVPELFRCQTEEASSITVELDQPYYRLLGFFFCCVVSHKLPPHYLDMDGGVNIKCEYLHLGHDIKHTFVCERLYFIGERRCNSDHVLIWNDPICNADILSKTGFIRGSYGSDDDESTCNEKMSFRFSVDRPGKGKRVEEREEDDEDCFIKGCGVYPVYASTVLDVIHELELEFKLNPHHDSTTGMDLEALKSAMIRMIRAKSIILCGYDSSSDSEEESCSDTEKGSSSD 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00010 1066 MobiDBLite consensus disorder prediction 1047 1066 - -
Stsc241806g00010 1066 Gene3D Ribonuclease Inhibitor 507 676 IPR032675 -
Stsc241806g00010 1066 Gene3D Ribonuclease Inhibitor 677 746 IPR032675 -
Stsc241806g00010 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 669 IPR044974 GO:0006952
Stsc241806g00010 1066 SMART till_3 11 149 IPR000157 GO:0007165
Stsc241806g00010 1066 Pfam C-JID domain 835 997 IPR045344 -
Stsc241806g00010 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 347 429 - -
Stsc241806g00010 1066 Gene3D - 10 175 IPR035897 -
Stsc241806g00010 1066 SUPERFAMILY L domain-like 524 797 - -
Stsc241806g00010 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Stsc241806g00010 1066 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Stsc241806g00010 1066 Gene3D - 345 429 IPR042197 -
Stsc241806g00010 1066 SMART AAA_5 207 346 IPR003593 GO:0016887
Stsc241806g00010 1066 Pfam TIR domain 11 182 IPR000157 GO:0007165
Stsc241806g00010 1066 PRINTS Disease resistance protein signature 580 596 - -
Stsc241806g00010 1066 PRINTS Disease resistance protein signature 287 301 - -
Stsc241806g00010 1066 PRINTS Disease resistance protein signature 210 225 - -
Stsc241806g00010 1066 PRINTS Disease resistance protein signature 380 394 - -
Stsc241806g00010 1066 Pfam NB-ARC domain 203 415 IPR002182 GO:0043531
Stsc241806g00010 1066 Pfam Leucine Rich Repeat 561 580 IPR011713 -
Stsc241806g00010 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 151 IPR035897 -
Stsc241806g00010 1066 Gene3D - 176 341 IPR027417 -
Stsc241806g00010 1066 SUPERFAMILY "Winged helix" DNA-binding domain 416 500 IPR036390 -
Stsc241806g00010 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00010 Stsc-Chr241806 46719 50643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00010 12 746 WRKY Transcription Factor Family AT4G12020 31.864 2.62e-90 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00010 - - ahf:112728390 1236.09