Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00009 ATGGCTTTTTCTTCTTTTGATGTTCCTGTAATCAAGCATGATATCTTCATCAGTTTCAGAGGAGAAGACATTCGCACTTCTTTTCTTAGCCACTTGAGAAAAGAATTGCGTCGTAACCAAATTGATTTCTTTGTTGATGATGAAAAGCTTCATCCAGGAGATGAGATTTCGTCCACATTTGTTCAAGCAATTGAGGAATCATCCATTTCACTGGTCATTTTCTCGAAAAACTATGCTTCTTCGAGATGGTGCATGGAGGAGCTTGTGAAGATAATTGAATGCATGGAACAATATGAAAGGATTGTGATACCTGTCTTTTACAACATTGATCCTTCTGATGTCAGGCATCAGAAACGAACTTTTGCAGAGGCTTTTGATGTGCACAAACAGAAATATGAGGAGGAAAACATGCAGAAGTGGAGATCTGTTTTAAAGGTGGCAGCAAATTTATCTGGAATTCATTATCCATCAAAATATCGCAATGAATCTGAATTCATTGAAGCAATTGTGAAGGATATCTCGGAGAAATTGTCGCATCAGTTTTCAAATGCATCCGAAGTCCTTATAGGAATTGATGAACATTTTAAGCTTATTAAACCTTTATTGGCAATTGAGTCTAATGAAGTTCGGATTGTGGGAATTTGGGGGATGGGAGGCATAGGTAAAACAACAATTGCTAAAGCAATATTTGACAGATATGCCTCTCGATACGAAGGTTGTTGCTTTCTACAAGAAGTAAGAGAAGAATCACACAAGTCTAGTCAACATTGCTTATATGAGAAGCTTATTTCTGAACTCCTTGAGGGTGAAAATCTCCTTGTGAAAGGATCAGCTCAAGCAAGATCTATGTATGTCAAGAGAAGGTTGAGTCGGAAAAAGGTTCTCATAGTGGTTGATGATGTGGATACATTAGATCAGTTAGATTATCTAACCAGAGAACAATTCTCTTTGGGAGCAGGTAGTAGGATCATTGTAACAACTAGAGACGAGCAAATACTACTTGCTGCAGGAGTGCATCACATATACAAGGTCCAGGAATTGAGCTTTCAAAGTTCCCTTAAGCTTTTTTGCCTGAAAGCCTTCCACAAAAGCTATCCTGAAAAGGGATATGAAAAGCTTTCACAAAGGGCAGTTCATTATGCAAATAGAATTCCATTAGCCTTAAAAAGTATTGGGATCCTTTTTATGCTCCAGAAGTGTAGTAGCTTGGGAAAGTGCACTAAGAAAACTCAAGGCTCATCCCGATTCGAGCATTTTCAATGTGTTAAAGTTGAGTTATGA 1281 0.3794 MAFSSFDVPVIKHDIFISFRGEDIRTSFLSHLRKELRRNQIDFFVDDEKLHPGDEISSTFVQAIEESSISLVIFSKNYASSRWCMEELVKIIECMEQYERIVIPVFYNIDPSDVRHQKRTFAEAFDVHKQKYEEENMQKWRSVLKVAANLSGIHYPSKYRNESEFIEAIVKDISEKLSHQFSNASEVLIGIDEHFKLIKPLLAIESNEVRIVGIWGMGGIGKTTIAKAIFDRYASRYEGCCFLQEVREESHKSSQHCLYEKLISELLEGENLLVKGSAQARSMYVKRRLSRKKVLIVVDDVDTLDQLDYLTREQFSLGAGSRIIVTTRDEQILLAAGVHHIYKVQELSFQSSLKLFCLKAFHKSYPEKGYEKLSQRAVHYANRIPLALKSIGILFMLQKCSSLGKCTKKTQGSSRFEHFQCVKVEL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00009 426 Gene3D - 11 176 IPR035897 -
Stsc241806g00009 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 395 IPR044974 GO:0006952
Stsc241806g00009 426 Gene3D - 177 341 IPR027417 -
Stsc241806g00009 426 PRINTS Disease resistance protein signature 288 302 - -
Stsc241806g00009 426 PRINTS Disease resistance protein signature 381 395 - -
Stsc241806g00009 426 PRINTS Disease resistance protein signature 211 226 - -
Stsc241806g00009 426 Pfam TIR domain 12 183 IPR000157 GO:0007165
Stsc241806g00009 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 395 IPR027417 -
Stsc241806g00009 426 SMART till_3 12 150 IPR000157 GO:0007165
Stsc241806g00009 426 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Stsc241806g00009 426 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Stsc241806g00009 426 ProSiteProfiles TIR domain profile. 11 177 IPR000157 GO:0007165
Stsc241806g00009 426 Pfam NB-ARC domain 197 399 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00009 Stsc-Chr241806 43745 45685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00009 13 389 WRKY Transcription Factor Family AT4G12020 30.343 6.60e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00009 - - ahf:112728390 594.734