Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00007 ATGGCTTCTTCTTCTTCTTCAAATGTTCATGTAATCAAACATGATGTCTTCATCAGTTTCAGAGGAGAAGACGTTCGCCCCTCTTTTCTTAGCCATTTGAGAAAAGAATTGCGTCGTAACCAAATTGATTTCTTTGTCGATGATGAAAAGCTTCATCCTGGAGATGAGATTTCATCCACACTTGTTCGAGCAATTGAGCAATCATATATTTCATTGATCATCTTCTCGGAGCACTATGCTTCTTCAAGATGGTGTATGGAGGAGCTTGTCAAGATTATTGAATGCAAGGAACAACATCAAAGGAGTGTCATACCTGTTTTTTACAAAGTTGATCCTTCTGATGTCAGGCATCAAAGAAGAACTTTTGCAGCAGCTTTTGATGTCCACCAAGGCAACTATCACGAGGAGATTATTCAGAATTGGAGATCTGTTTTAAAGGAGGCAGCTAATTTATCTGGAATTCATTATCCATCCAAATATTGGGATGAATCAGAACTCACTGAAGAAATTGTCAAAAATATTTCACAGAAATTGTCACAACTGTTTTCATATGCATCCGAAGGCCTCATTGGAATTGATGAAAATTTTAAACATATTCAATCTTTATTGAAAATTGAGTCTAATGAAATTCAAATTCTGGGAATTTGGGGTATGGGAGGCATAGGTAAAACAACACTTGCTAAAGCAGTATTTGACAGATATTCCTCTCAATATGATGGTTGCTGCTTTCTAAAAAATGTAAGAGAAGAATCACAAAAGTCTAGTCTACATTGCTTATATGAGAGACTTATTTCTGAACTACTTGACGAGGGAGAACATCTCCTTGTGAAGGGACCAGCCCAAGCAAGATCTATGTATGTCAAGAGAAGGTTGAGTTGGAAAAAAGTTCTTATAGTGCTTGATGATGTGGATACATTAGACAAGTTAGATTACCTAGCCAGAGAACAAATCTGTTTGGGAGCAGGTAGTAGGATCATTGTAACAACTAGAGACAAGCAAATACTAATTGCTGCAGGAGCACATGGAATATACAAGGTCCAGGGATTGAGCTTCGGAAGTTCCCTTGAGCTTTTTTGCTTAAAAGCCTTTCACAAAAGATATCCTAATAAAGGATATGGAAAGCTTTCAGAAATGGCAGTTGATTATGCAAATGGCATTCCATTAGCCTTAAAAGTATTGGGATCCTTTTTATGCTCAAGAAGTGCAGTAGCTTGGGAAAGTGCACTTAGAAAACTCAAGATGCATCCCGATCCGAGCATTTTCAATGTGTTAAAGTTGAGTTATGATGGATTAGATGATTCAGAGAAGAACATATTCCTTGACATTGATTTCTTTTTCAAAGGAGAAGACAAGGATAACGTCATAAGGTTTCTAGACTCTTGTGATTTCTTTGGAGGAATTGGAATAGACAACCTCCAACGTAAGGCTCTTGTAGCTATTTCCAACAATAGAATAGAAATGCATGACTTGATACAACAAATGGCTTGGGAAATAGTTTGGCAAGAATCAAATAAAGACCCTGGAAAGCTTAGTAGAATAAGTAGACCTGAAGAATTCTACAATTTATTGAAAAATACACAAGGAAAAAATGCAGTTGAAGGTATTATGATAGACTTGTCACATACTAAAGATCTATATTTGAGTGCCAACACCTTCCGAAATATGCCTCGTCTAAGATTTCTTAAACTTTACAGCAGCTCAGATCAAAGATCATCTAATGTATTTGTTCCTACAACTCTTGAGACATTTGGTGATGAGCTAAGATACTTTGAATGGCATGAATATCCTTTGAGTTCCATGCCGTCAGCATTTTGTGCTGAGATGCTTGTTGAGTTTCGTATGCCAGGCAGTAAGGTTTCTAAACTTTGGGATGGAGTGCAGGATCTTGTGAATTTAAAGATAATTGATCTTTGGGGATGCAAACAGTTGGCTGAACTTCCAGATCTTAGTAAGGCAACAAATCTTGAGAAGATAGACATCTCCTATTGTGAAGATCTGTGTAAACTTCACCCATCTATTTTATCCATCCCCAAACTCAAAAAATTGAGCCTTTTTAGCTGCAAAGAACTGAAGAGTTTTGAAGGGGAGATTCATTCCAAGTCTCTTAAAGTACTTGATTTTGAAGGTTGCTCAAGGTTAAAGGAATTTTCGGTGTCATCAGGGAAACTACATTCTTTGCTTTTCAGTTACTCAAGAATTAGGAGTCTTCCTAATGGGCTATGCTTCTTCAAGTGTCTGGAAGTACTTGAATTTTATAAATGCAGAGAGCTGATTGAACTTCCTGACAATATCAAAGCCTTATCACGATTGGAGATTCTCAGAGTAATTGGTTGCAATAGTCTTCGATCGATACCTGAACTTCCGCCATCTATAAAAGATTTATATGCTGATGAGTGCACATCACTGGAAACAATATTCAGTTTAAAGGAAGTATTCAGTTTGAATAGAAGACGTATCTCATTTGGAAATTGTATGAGATTGGATGAAGAGTCATTGAATGATATCATGGAAGATACCTGTTTCACAATATTCACAAATATATTGTTGACAGCAGCACAAACGTATAATTTATCCAGGGATTCTTATGATCATTACCTGAGATGTCATGCATTTTATCCAGGAAGCAATGTGGCAGAGTGGTTGAGATGTCAGACAGCAGAAGGAGCTTCTAAAACAGTTGAAATAGATCAACCTTACCAACACTTGTTGGGTTTCTGTTTCTGCTGTGTTCTTTCTCCAATGTTCTCTCCTTATGACTATATCCATTGTGAATGCCGCGTGGGAAATCGTGCAAAGTACACATATGGAATATATGAGCTAAATAGTGAAGTTGAAAGATTCAGCTCTGATCACGTTTTTCTATGGTTCCATCCAGATCATAATCGCGACATATTGAGGGCTGTTAAGAGGGGCATAGTCCATCATGATGATGGCATCACTTGCAACCAAACCATTTCATTCACATTCTTTGTTGAAGGATTTAGTTCTGTAGAGGATATTTTGATTAAAGGGTGTGGGGTTTTTCCAATATATGCTTCAGATGTCCTCCATCTCATTCCAAAACTGGAATTGGAGTTGAAGGGTCTTCATCCAGATTTGGATCTTGATACACTGGAAAGTAACCTCATTCAGAAGATTAATGAAAAATCAATCCTTCTTGAACTTGATAGTAGCAGTGACCAAGAAGGAGAAGAAGAAAATGAAGTCCTACTAGAATTCGATAGTAGCAGTGACCAAGAAGAAGAAGAAGAAGAAGAAGAATGA 3264 0.3719 MASSSSSNVHVIKHDVFISFRGEDVRPSFLSHLRKELRRNQIDFFVDDEKLHPGDEISSTLVRAIEQSYISLIIFSEHYASSRWCMEELVKIIECKEQHQRSVIPVFYKVDPSDVRHQRRTFAAAFDVHQGNYHEEIIQNWRSVLKEAANLSGIHYPSKYWDESELTEEIVKNISQKLSQLFSYASEGLIGIDENFKHIQSLLKIESNEIQILGIWGMGGIGKTTLAKAVFDRYSSQYDGCCFLKNVREESQKSSLHCLYERLISELLDEGEHLLVKGPAQARSMYVKRRLSWKKVLIVLDDVDTLDKLDYLAREQICLGAGSRIIVTTRDKQILIAAGAHGIYKVQGLSFGSSLELFCLKAFHKRYPNKGYGKLSEMAVDYANGIPLALKVLGSFLCSRSAVAWESALRKLKMHPDPSIFNVLKLSYDGLDDSEKNIFLDIDFFFKGEDKDNVIRFLDSCDFFGGIGIDNLQRKALVAISNNRIEMHDLIQQMAWEIVWQESNKDPGKLSRISRPEEFYNLLKNTQGKNAVEGIMIDLSHTKDLYLSANTFRNMPRLRFLKLYSSSDQRSSNVFVPTTLETFGDELRYFEWHEYPLSSMPSAFCAEMLVEFRMPGSKVSKLWDGVQDLVNLKIIDLWGCKQLAELPDLSKATNLEKIDISYCEDLCKLHPSILSIPKLKKLSLFSCKELKSFEGEIHSKSLKVLDFEGCSRLKEFSVSSGKLHSLLFSYSRIRSLPNGLCFFKCLEVLEFYKCRELIELPDNIKALSRLEILRVIGCNSLRSIPELPPSIKDLYADECTSLETIFSLKEVFSLNRRRISFGNCMRLDEESLNDIMEDTCFTIFTNILLTAAQTYNLSRDSYDHYLRCHAFYPGSNVAEWLRCQTAEGASKTVEIDQPYQHLLGFCFCCVLSPMFSPYDYIHCECRVGNRAKYTYGIYELNSEVERFSSDHVFLWFHPDHNRDILRAVKRGIVHHDDGITCNQTISFTFFVEGFSSVEDILIKGCGVFPIYASDVLHLIPKLELELKGLHPDLDLDTLESNLIQKINEKSILLELDSSSDQEGEEENEVLLEFDSSSDQEEEEEEEE 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00007 1087 Gene3D - 178 340 IPR027417 -
Stsc241806g00007 1087 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Stsc241806g00007 1087 PRINTS Disease resistance protein signature 290 304 - -
Stsc241806g00007 1087 PRINTS Disease resistance protein signature 212 227 - -
Stsc241806g00007 1087 PRINTS Disease resistance protein signature 383 397 - -
Stsc241806g00007 1087 PRINTS Disease resistance protein signature 627 643 - -
Stsc241806g00007 1087 Pfam TIR domain 13 184 IPR000157 GO:0007165
Stsc241806g00007 1087 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 180 - -
Stsc241806g00007 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 442 IPR027417 -
Stsc241806g00007 1087 SMART till_3 13 151 IPR000157 GO:0007165
Stsc241806g00007 1087 MobiDBLite consensus disorder prediction 1056 1087 - -
Stsc241806g00007 1087 Gene3D - 12 177 IPR035897 -
Stsc241806g00007 1087 Gene3D Ribonuclease Inhibitor 699 839 IPR032675 -
Stsc241806g00007 1087 Gene3D Ribonuclease Inhibitor 516 698 IPR032675 -
Stsc241806g00007 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 717 IPR044974 GO:0006952
Stsc241806g00007 1087 SUPERFAMILY "Winged helix" DNA-binding domain 420 503 IPR036390 -
Stsc241806g00007 1087 MobiDBLite consensus disorder prediction 1058 1087 - -
Stsc241806g00007 1087 Pfam Leucine Rich Repeat 609 627 IPR011713 -
Stsc241806g00007 1087 Gene3D - 349 432 IPR042197 -
Stsc241806g00007 1087 Pfam NB-ARC domain 200 415 IPR002182 GO:0043531
Stsc241806g00007 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 153 IPR035897 -
Stsc241806g00007 1087 SUPERFAMILY L domain-like 535 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00007 Stsc-Chr241806 36970 40715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00007 14 786 WRKY Transcription Factor Family AT4G12020 32.950 1.90e-102 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00007 - - ahf:112728390 1362.82