Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00004 ATGGAGGAGCTTGTGAAGATAATTCAATGCATGAAACAATATGAAAGGATTGTGATACCTGTCTTTTACAATATTGATCCTTCTGATGTCAGGCATCAGAAACGAACTTTTGCAGAGGCTTTTGATGTCCACAAAGAAAGATATGAGGTGGAACATATGCAGAATTGGAGATCCGTTTTAAAGGAGGCAGCAAATTTATCTGGAATTCATTATCCATCAAAATATAGAAATGAATCTGAGCTCGTTGAAGAAATTGTCAAGCATGTTTCGGAGAAATTGCCACATCTGTATTCAAATGCATCCGAAAGCCTTATTGGAATGGATGAAAATTTTAAACATATTCAACCTTTATTGGCAATCGAGTCTGATGAAGTTCAATTTCTTGGAATTTGGGGTATGGGAGGAATTGGTAAAACAACCATTGCCAAAGCAATATTTGACAGATATTCCTCTCGATACGAAGGTTGCTGCTTTCTACAAAATGTAAGAGAAGAATCACAGAAGTTTAGTCCACATTACTTACATGAGAAACTTGTTTCTGAACTCCTTGAGGGGGAAAATCTCCTTGTGAAGGGATTGGCTCAAGCAAGATCTATGTATGTCAAGAGAAGGTTGAGTCGAAAAAAGGTTCTCATAGTGCTTGATGATGTGGATACGTTAGACAAGTTAGAGCATCTAGCAAGAGAACAAATCTGTTTGGGAGCAGGTAGTAGAGTTATTGTAACAACTAGAGATGAGCAAATACTAATTGCTGCAAGAGTCCATGACAGATACAAGGTCCAGGAATTGGGCTTTGAAAGTTCCCGTGAGCTTTTTTGCCTAAAAGCCTTTCACAAAAGCTATCCTGAAAATGGATATGAAAAGCTTTCACAAATGGCAGTTCATTATGCAAATGGCATTCCATTAGCCTTAAAAAGTATTGGGATCCTTTTTATGCTCAAGAAGTGCAGTAGCATGGGAAAGTGCACTAAGAAAACTCAAGACTCATCCTGA 993 0.3787 MEELVKIIQCMKQYERIVIPVFYNIDPSDVRHQKRTFAEAFDVHKERYEVEHMQNWRSVLKEAANLSGIHYPSKYRNESELVEEIVKHVSEKLPHLYSNASESLIGMDENFKHIQPLLAIESDEVQFLGIWGMGGIGKTTIAKAIFDRYSSRYEGCCFLQNVREESQKFSPHYLHEKLVSELLEGENLLVKGLAQARSMYVKRRLSRKKVLIVLDDVDTLDKLEHLAREQICLGAGSRVIVTTRDEQILIAARVHDRYKVQELGFESSRELFCLKAFHKSYPENGYEKLSQMAVHYANGIPLALKSIGILFMLKKCSSMGKCTKKTQDSS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00004 330 Gene3D - 1 62 IPR035897 -
Stsc241806g00004 330 PRINTS Disease resistance protein signature 127 142 - -
Stsc241806g00004 330 PRINTS Disease resistance protein signature 297 311 - -
Stsc241806g00004 330 PRINTS Disease resistance protein signature 204 218 - -
Stsc241806g00004 330 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 68 IPR035897 -
Stsc241806g00004 330 Gene3D - 73 256 IPR027417 -
Stsc241806g00004 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 313 IPR027417 -
Stsc241806g00004 330 ProSiteProfiles TIR domain profile. 1 93 IPR000157 GO:0007165
Stsc241806g00004 330 Pfam NB-ARC domain 121 316 IPR002182 GO:0043531
Stsc241806g00004 330 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 312 IPR044974 GO:0006952
Stsc241806g00004 330 Pfam TIR domain 2 99 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00004 Stsc-Chr241806 10074 11272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00004 4 305 WRKY Transcription Factor Family AT4G12020 31.046 1.57e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00004 - - ahf:112728390 471.47