Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00003 ATGCCTCATCTAAGATTTCTTAAGCTTTATGGTTATTGGGATCGACAGTCAAATGTGTGTGTTCCCACAACCCTGGAGCCGTTTTCTGCGAAACTCAGGTATTTGGAGTGGAATAGTTATCCTCTGAATTCTCTACCATCAAGGTTTTGTGCAGAGAAGCTTGTTGAAATTAGGATGCCTTACAGTGAAATTTCTAAACTCTGGGATGGAAAGCAGTTGGTAGAGCTTCCAGATTTCAGTAAAGCAACAAAGCTTAAAACCATAGACCTTTGCTATTGTGAAAAACTATGTCAACTTCATCCATCTATTTTATATATCCAAACACTTGAGCAATTGCATCTTAATGGTTGCACAGAATTGAAGAGTGTCAAAGGCAATTTGATGTCTCTTAAAGAACTTTATGCTAATAAATGTTCAAGCCTGGAGGAATTTTCAGTGTCTTCAGAGACAGTGACGAATTTGTGTTTCTGTTTTTCTAGAATTAAGAATCTCCCAGATGAATTCAGCTGCTTTATATCTCTTGAGAATCTTTGTCTTTGTGATTGCACAGAGCTAATTGAGCTGCCACACAACATCAAAACCCTATCAAGTTTAAGGACTCTTGAGGTAAGAGGTTGTTCAAGTGTTTCGTGCCGATGGCTGCACATCACTGGAAAGAATATTCAGTTTGAAGGCAAAGATCAAAACCTGATGAATTATAATCATTATCTTGACATGGATGGTCATGTTTCTTATGCTAACTATCTTGACGTGAAAGGTAGTGTTTGTTATCCAGGGTACGAAGTTCCAGAGTGGTTCAGATGTCAGGCAGAAGAAGCATCATCCATAACAGTTGAACTTGATCAACCTTACTACTGGTTGTTGGGTTTCTTCTTCTGTTGTGTTGCTTCTCATAAGTTACCTCCTCATTATTTCGAAGAACGGGATGGTGGTGTCAATATCAAGTGTGAATACCGCCACTTGGGACATGCCGTAAAGCATACATTTGTTTGTGAACGGCTATACTTCGTTGGTGAAAGAAGATGCAAATCTGATCATGTTTTGATTTGGAATGATCCAATATGTAATGCTGACATATTGAGTAAAACAGGGTTCATTAGAGGCTGTTATGGCAGTGATGATCATGACAGCACTTGCAACGAAAAGATGTCATTCAGATTCAGTGTTGATAGACCTGAGAAAGGGAAGAGAGTGGAAGAAAGGGAAGAAGATGATGAAGATTGTTTTATCAAAGGATGTGGGGTTTTTCCAGTGTATGCCTCAACTGTCCTTGATGTCATTCATGAACTTGAATTGGAGTTCAAGTTGAACCCTCATCATAACTCCACCACAGGGATGGATCTCGAAGCATTGAAAAGTGCGATGATCCGGATGATTAGAGCAAAATCAATAATCCTCCGTGGATACGATAGTAGCAGTGACTCAGAAGAAGAAAGTTGCAGTGACACAGAAGAAGGAAGTTGCAGTGATTAA 1473 0.3931 MPHLRFLKLYGYWDRQSNVCVPTTLEPFSAKLRYLEWNSYPLNSLPSRFCAEKLVEIRMPYSEISKLWDGKQLVELPDFSKATKLKTIDLCYCEKLCQLHPSILYIQTLEQLHLNGCTELKSVKGNLMSLKELYANKCSSLEEFSVSSETVTNLCFCFSRIKNLPDEFSCFISLENLCLCDCTELIELPHNIKTLSSLRTLEVRGCSSVSCRWLHITGKNIQFEGKDQNLMNYNHYLDMDGHVSYANYLDVKGSVCYPGYEVPEWFRCQAEEASSITVELDQPYYWLLGFFFCCVASHKLPPHYFEERDGGVNIKCEYRHLGHAVKHTFVCERLYFVGERRCKSDHVLIWNDPICNADILSKTGFIRGCYGSDDHDSTCNEKMSFRFSVDRPEKGKRVEEREEDDEDCFIKGCGVFPVYASTVLDVIHELELEFKLNPHHNSTTGMDLEALKSAMIRMIRAKSIILRGYDSSSDSEEESCSDTEEGSCSD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00003 490 MobiDBLite consensus disorder prediction 475 490 - -
Stsc241806g00003 490 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 145 IPR044974 GO:0006952
Stsc241806g00003 490 Gene3D Ribonuclease Inhibitor 154 214 IPR032675 -
Stsc241806g00003 490 Gene3D Ribonuclease Inhibitor 1 153 IPR032675 -
Stsc241806g00003 490 Pfam C-JID domain 258 421 IPR045344 -
Stsc241806g00003 490 MobiDBLite consensus disorder prediction 470 490 - -
Stsc241806g00003 490 Pfam Leucine Rich Repeat 53 72 IPR011713 -
Stsc241806g00003 490 SUPERFAMILY L domain-like 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00003 Stsc-Chr241806 7123 9572 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00003 1 209 WRKY Transcription Factor Family AT4G12020 35.745 2.04e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00003 - - aip:107626076 484.182