Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241806g00002 ATGCTTTCTAAGCAGATTGATTTCTTTGTTGACGATAAAAATGTTCATCATGGGGATCAGATTTCACCCACACTTGTTCAAGCAATTGGGGAATCCTTTATTTCACTGGTCATCTTCTCGGAACACTATGCTTCTTCTAAATGGTGTATGGAGGAGCTTGTGAAGATAACTGAATGCATGAAGCAATATAAAAGGATTGTGATGCCTGTATTTTACCATGTTGAGCCTTATCAGGTAAGGCACCAGAAAGGCACATTTGCAGAGGCTTTTGATGACCACAAAAGGAAGTATAAAGTAAAGAAAACAGAGCTGCAGAAATGGAGATCCGTTTTAAAGGAGATTGCTAACATATCTGGAAATCATTATCCTTCTCCAAAATATGAAAATGAATCTGAACTCATCGAAGAAATTGTCAAGGAAATTTCGGAGAAACTACCGGATACTTTTTCAAATGCATCCCAAGGGCTTATAGGAATTGATGAAAATTTTAAATTTCTTCAACCTTTAATGGCAATTGAGTCTGATGAGGAAGTTCGAATTGTGGGAATTTGGGGAATGGGAGGCATAGGTAAAACAACAATTGCTAAAACATTATTTGCCAAATATGCCTCTCGATACCAAGGTTGTTGCTTTCTACATAATGTAAGAGAAGAATTGCAAAAGTGTAGTCAACATTCCTTGTATGAGAAACTTATGTCTGAACTACTTGAAGGAGAATATCACCTTGTGAATGGCTCAGCCCAAGCAAGATTAGCGAATTTCAAGAGAAGGATAAGTCGGAAAAAGGTTCTCATAGTGCTTGATGATGTGGATTCATTAGACATGTTAGATTATCTAACAAGGGAACAAATCAATCTGGGAGCAGGTAGTAGGGTCATTGTAACAACTAGAAACGAGCAAATACTAATTGCTGCAAGAGTGCATCACAGATACAAGGTCCAGGAATTGAGCTTTCAAAGTTCCCTTGAGCTCTTTTGCATAAAAGCCTTTAACAAAAGCTATCCTGAAAATGGATATGAAAAGCTTTCAGAAATGGCAGTTCATTATGCAGATGGCGTTCCATTAGCCTTAAAAGTATTGGGTTCCTTTTTATGCTCAAGAAATGCAGAAGCTCGGGAAAGTGCACTAAAAAAACTCAAGACTTATCCAGATCCAAGCATTTTCAATGTGCTAAAATTGAGTTATGATGGATTAGATGAGGCAGAGAGGAATATATTCCTAGACATTGCTTTCTTTTTCAAAGGAGAATACAAGGATGGTGTCATAAGGTTTCTAGATTCTTGTGATTTCTTTGCGGGCATTGGAATAGACACTCTTGAACGTAAAGCATGA 1332 0.3739 MLSKQIDFFVDDKNVHHGDQISPTLVQAIGESFISLVIFSEHYASSKWCMEELVKITECMKQYKRIVMPVFYHVEPYQVRHQKGTFAEAFDDHKRKYKVKKTELQKWRSVLKEIANISGNHYPSPKYENESELIEEIVKEISEKLPDTFSNASQGLIGIDENFKFLQPLMAIESDEEVRIVGIWGMGGIGKTTIAKTLFAKYASRYQGCCFLHNVREELQKCSQHSLYEKLMSELLEGEYHLVNGSAQARLANFKRRISRKKVLIVLDDVDSLDMLDYLTREQINLGAGSRVIVTTRNEQILIAARVHHRYKVQELSFQSSLELFCIKAFNKSYPENGYEKLSEMAVHYADGVPLALKVLGSFLCSRNAEARESALKKLKTYPDPSIFNVLKLSYDGLDEAERNIFLDIAFFFKGEYKDGVIRFLDSCDFFAGIGIDTLERKA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241806g00002 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 409 IPR027417 -
Stsc241806g00002 443 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 442 IPR044974 GO:0006952
Stsc241806g00002 443 Pfam TIR domain 4 153 IPR000157 GO:0007165
Stsc241806g00002 443 ProSiteProfiles TIR domain profile. 1 145 IPR000157 GO:0007165
Stsc241806g00002 443 PRINTS Disease resistance protein signature 180 195 - -
Stsc241806g00002 443 PRINTS Disease resistance protein signature 257 271 - -
Stsc241806g00002 443 PRINTS Disease resistance protein signature 350 364 - -
Stsc241806g00002 443 SMART till_3 3 117 IPR000157 GO:0007165
Stsc241806g00002 443 Gene3D - 316 399 IPR042197 -
Stsc241806g00002 443 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 119 IPR035897 -
Stsc241806g00002 443 Gene3D - 1 149 IPR035897 -
Stsc241806g00002 443 Gene3D - 150 310 IPR027417 -
Stsc241806g00002 443 Pfam NB-ARC domain 173 372 IPR002182 GO:0043531
Stsc241806g00002 443 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241806g00002 Stsc-Chr241806 4801 6753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241806g00002 26 443 WRKY Transcription Factor Family AT4G12020 31.818 1.86e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241806g00002 - - ahf:112728390 639.032