Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241802g00016 ATGGCTTCTGGTGGTATTTCAAGATCTTCTGTAAGGTTTCATGATGATGTTGAGACAGACAAGTTGACAGAAAGCAAGGAAAGGAGTCAGTTATCAATGCATGGCTATAACAAGATAATGAGTGGAAAACAGAACCATGGGAAGGATGGAACAAGAGGAAAGTGCTTGGAGAGAAGAAGAGAACTTTCTAGAGTCTTCTCAGAGGATTATGACGCAAAAGAGATTCTGATATTGGATCCAAGGGGCCCAAGAGTGAATAGATGGAACAAGATTTTCTTAGTAGCATGCTTGATTTCATTGTTTGTGGATCCTTTGTTCTTTTACTTGCCAGTGGTCAAGAAAGAAAAGTGCATTGACATGTCTATTGCTCTTGAGGTTTCCCTCACCATAATCCGGTCCATGGTTGATGCATTTTACATTATTCAGATTTATGTGAGGTTTCAAACTGCTTATGTCGCACCTTCTTCGCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCGAGGATCGCATCGCAGTATATGCGTAAGGACTTTTGGATTGATCTACTGGCTGCACAGCCACTTCCTCAGGTGGTTATTTGGAGTGTGATTCCAAATCTAAAGGGGTCACAAATGTTTGCTTCAAGGCATGTTCTGAGCATGGTTACCATTTTTCAGTACCTGTTGAGGCTATATCTGATCTATCCTCTTTCACATGAAATCATCAAGACTAAAGGGGTGATGATGGAGAAAGCTTGGGCTGGTGCAGCATATAATCTTACGCTCTATATGCTAGCAAGTCATGTTTTAGGATCATGCTGGTATCTGTTATCAATTGAAAGGCAAGATGAGTGTTGGAAGAAAGTTTGTAGTCTTGAGTACCCAAGGTGCAAGTACCATTATCTTGAATGTCATAGCATAAGGGACCCTGATAGGAGTTGGTGGCTAAAATCGAGCAATATCTCAGGCCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTTTCTTTGGAAGTAACAGCCTCAGAATTCTTCAGCAAATATTATTATTGTCTTTGGTGGGGACTGAGAAATCTTAGCTCTTTAGGACAGAATCTGTTAACAAGCACGCAAGTTACAGAGATAAATTTTGCTGTGATTGTTGCTATCCTTGGATTGGTGCTGTTTGCATTGCTGATAGGAAATATGCAAACATATTTGCAATCAACAACAATGAGACTGGAAGAATGGAGAGTAAGGAGAACAGATACAGAAAGATGGATGCACCATAGGCAACTACCTCGACATCTAAAGCAAAATGTGAGAAGGTATGACCAATTGAGATGGGTTGCCACTCGTGGTGTTGATGAAGAAGCCATTCTTAGAGACCTTCCTGCTGATCTTAGACGTGACATTAAGCGTCACCTTTGTCTCAATCTTGTTCGCCAAGTACCATTATTTGATCAGATGGATGAGAGAATCCTAGACGCTATATGTGAGAGACTAAAACCTTCACTATGTTCTCAAGGGACATGCCTTGTCAGAGAAGGTGACCTTGTCCATGACATGCTCTTCATAGTAAGAGGCCACTTAGACTCTTGCACCACCAATGGTGGCCGTACTGGCTTCTTCAACTCCTCTCGAATTGGGCCTGGTGACTTTTGCGGTGAGGAGCTTCTCACATGGGCCTTGGACCCCCGTCCAACTGTGGCCCTTCCTTCTTCAACAAGAACAGTCAGGGCCATAACTGAAGTTGAGGCCTTTGCACTCATTGCTGAAGACTTGAAATTTGTTGCAGCCCAATTCAGAAGGTTACACAGCAAACAACTTAGGCACACTTTTAGGTTCCATTCTCATCAATGGAGAACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTAGGTATAAGAGGATGAAGGAGACAACCGAGCTCCATAGAAAGGAGAGTCCCATGATGGTGTTGATGGCCTGTGGGCCTGGAAATGGGCCTGAGCACTTCTCTGCTCCCTTGCAGCCCATGAGTGGATCTAGTTTTAGTATGTATTCATCAAAATTCGCAGCAAGCCCAAGAAGAGGGAGGAGCCTGAGATATGGGCCCGAGTTTGATATGTTTCTTGGGTCATTGAGGAAGCCCCTTGAACCAGATTTTGCGGATGATGATGATGATGATAAGTGA 2160 0.4296 MASGGISRSSVRFHDDVETDKLTESKERSQLSMHGYNKIMSGKQNHGKDGTRGKCLERRRELSRVFSEDYDAKEILILDPRGPRVNRWNKIFLVACLISLFVDPLFFYLPVVKKEKCIDMSIALEVSLTIIRSMVDAFYIIQIYVRFQTAYVAPSSRVSGRGELIIDSSRIASQYMRKDFWIDLLAAQPLPQVVIWSVIPNLKGSQMFASRHVLSMVTIFQYLLRLYLIYPLSHEIIKTKGVMMEKAWAGAAYNLTLYMLASHVLGSCWYLLSIERQDECWKKVCSLEYPRCKYHYLECHSIRDPDRSWWLKSSNISGLCDQNSDFFQFGIFADALSLEVTASEFFSKYYYCLWWGLRNLSSLGQNLLTSTQVTEINFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRVRRTDTERWMHHRQLPRHLKQNVRRYDQLRWVATRGVDEEAILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERILDAICERLKPSLCSQGTCLVREGDLVHDMLFIVRGHLDSCTTNGGRTGFFNSSRIGPGDFCGEELLTWALDPRPTVALPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETTELHRKESPMMVLMACGPGNGPEHFSAPLQPMSGSSFSMYSSKFAASPRRGRSLRYGPEFDMFLGSLRKPLEPDFADDDDDDK 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241802g00016 719 CDD CAP_ED 480 611 IPR000595 -
Stsc241802g00016 719 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Stsc241802g00016 719 Gene3D - 91 404 - -
Stsc241802g00016 719 SMART cnmp_10 480 611 IPR000595 -
Stsc241802g00016 719 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241802g00016 719 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Stsc241802g00016 719 Gene3D Jelly Rolls 478 598 IPR014710 -
Stsc241802g00016 719 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Stsc241802g00016 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 686 - -
Stsc241802g00016 719 SUPERFAMILY cAMP-binding domain-like 410 602 IPR018490 -
Stsc241802g00016 719 ProSiteProfiles cAMP/cGMP binding motif profile. 480 563 IPR000595 -
Stsc241802g00016 719 Gene3D Helix hairpin bin 407 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241802g00016 Stsc-Chr241802 81397 84113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241802g00016 51 643 Ion Channels AT2G28260 69.140 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241802g00016 K05391 - gmx:100815543 1146.34