Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241802g00015 ATGTCTGCCACTGCAGCTTCTCTTGCTCTTCCAACCCTATCACTCCGAACCCGTCAACCCCTCTCTTCTTCTCCTTCACACTGTTTCTCTTCTCTCTCTTTCAACTCCGCCAAATCCCCTTCCATTTCCACCACTTTCCTTCCTCTTCCTCCAACCCTCCTCTCCTCCCGCTTCGTTTCAAATGTCGCTCTTTCCTCCGAATTCGACCAAGACGAGGACATTCTCACCGATGGAGATGACCGCACCTTCTCCCCTGACCTCAAGCTCTTCGTTGGCAACCTTCCTTTCTCCGTTGACAGCGCCCAACTCGCCGAGCTCTTTGAAACTGCTGGCACCGTTGAAGTCGTTGAGGTGATTTATGATAAGATGAGTGGAAGAAGCAGGGGCTTTGGTTTTGTGACCATGTCTTCTGTTGAGGAAGCTGAAGCTGCTAAACAACAATTCGATGGCTATGAGCTAGATGGGAGGGCACTAAGGGTGAATTCTGGACCACCTCCTGCTAAGAATGAGGGTTCCCGTTTCAGATCTCCTTCCCGAGGTGGTTTTTCTTCTGATAATGGAAACCGTGTTCATGTTGGTAATCTTGCGTGGGGTGTTGACCACTTGGCACTTGAGAACTTGTTTCGTGAACAAGGAAAAGTTTTGGAGGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGATTTGTCACCTACAGCACCCCTGAAGAGGTCAACAGTGCTATTGAGTCCTTAGATGGCGCGGACTTGAATGGCAGATCTATTAGAGTTTCTTTAGCAGATTCTAAGCCAAAGCGCCCATTTTGA 819 0.4872 MSATAASLALPTLSLRTRQPLSSSPSHCFSSLSFNSAKSPSISTTFLPLPPTLLSSRFVSNVALSSEFDQDEDILTDGDDRTFSPDLKLFVGNLPFSVDSAQLAELFETAGTVEVVEVIYDKMSGRSRGFGFVTMSSVEEAEAAKQQFDGYELDGRALRVNSGPPPAKNEGSRFRSPSRGGFSSDNGNRVHVGNLAWGVDHLALENLFREQGKVLEAKVIYDRESGRSRGFGFVTYSTPEEVNSAIESLDGADLNGRSIRVSLADSKPKRPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241802g00015 272 SUPERFAMILY RNA-binding domain, RBD 84 187 IPR035979 GO:0003676
Stsc241802g00015 272 FunFam 28 kDa ribonucleoprotein, chloroplastic 181 270 - -
Stsc241802g00015 272 CDD RRM2_NsCP33_like 189 264 - -
Stsc241802g00015 272 MobiDBLite consensus disorder prediction 161 185 - -
Stsc241802g00015 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 159 IPR000504 GO:0003723
Stsc241802g00015 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Stsc241802g00015 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Stsc241802g00015 272 PANTHER OS02G0815200 PROTEIN 16 267 - -
Stsc241802g00015 272 SMART rrm1_1 88 161 IPR000504 GO:0003723
Stsc241802g00015 272 SMART rrm1_1 189 262 IPR000504 GO:0003723
Stsc241802g00015 272 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Stsc241802g00015 272 Gene3D - 65 185 IPR012677 -
Stsc241802g00015 272 Gene3D - 186 271 IPR012677 -
Stsc241802g00015 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241802g00015 Stsc-Chr241802 78348 80414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241802g00015 89 270 Eukaryotic Initiation Factors Gene Family AT1G49760 29.189 1.58e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241802g00015 - - gmx:100786275 348.977