Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241802g00010 ATGGATCAGGATGAGAAGTTGCGCAAGTGTTCCAATATGAAATGCCAAAGGGTTCAGGTGGATGAATCATCTGTACCTGCTCACAAGGATGAAGTGATGGAAGTTGACCATTTTCTTGCAGAAAATAGAAACGAGCACGTCTCAGCAGATGGTGGTTTGGACATTCATGCAGCTTTCAATGGAAAGGATGACTTGGAGATGGAGGTCCTTGATGGATTTTTGGATGATGTTGAAATCGATGACCTTGAAGGAACTGATGTTTTCTCCGGTGCATGCGAGGAGTATCTTTTTGATTTTGAATTTGACAGCAAGGCTGAGGTGCTCGGCCCTGGTCCTTGTGAAGGTTCCCTTCTGCAAAACTCAACTTCAGAAAGTCATTCTTCAGAATTGAGTGGAAGCAGCAGCATTGGTGCCTTCAGGAACAATCCACATCAACCATCAAATGAAGATTGTCTGTACAACATTTCACTCGACATCCCGCATCTACATCAGTTGGATAATGATAATCGTTTGGCTGGTGGTATATTATATTGTAAAAAGGAAACGGGTTCAATTGAAAAGAGCCAACCTACTGCACTTAAAGAGAAGAGATGCCGAAAGCCTACCCGTAGGTACATTGAAGAATCTTCAGATTCAAGGTCAAAGGAAAAGGTACCAACTGCTGGTACAAAAAGAAAACATTCAAATGTCACATCATGTGATGAACTTCATATAAGAATTAAAGCATTGAGAAAGATTCGAGTTGAGAAGTCCAGTAATGGAATTAGTGATGCGACAATTCCAAAGTTGAAAGTTCGCAGGGGCCGGCCAAAGAAGGAGAAACTTTATGAGGAGGAGCCAGTTTCCTCAGAGTCTGAGGATGAATGTTTGACACCAAAAAGATCTAAAAAGAAAGACCGGAGAAAGCATCAGAGGATGTGGACTGCCGCTGAGGTTATTAAGTTGGTTGATGGCATATCTGAATATGGAGTTGGTAGATGGACGGATATAAAGAGGTTTTCATTTTCTTCTTCAAGCTATCGAACACCCATAGATCTCAGGGACAAGTGGCGTAATCTTTTAAGAGCCAGTTCCATTCAGACGAATACAATAGAGGACCAGAAAGAGGATGATGAAAATGATGATCATGGTATACGCCCCTTACCATCTAACGTGGCATGCCGTGTGCGTGAATTGGCTAAAATTCATCCATACCCAAGGCAACGCGGATCAAAGAATTCACGCAGCATCAAACATGGAACTTCTACTTCAGTTAGTCAAAGTAAAGATTCTCCTCCCATTTGCCAGAGCAAAAGGAATGTACGGAGGAAGTGTACTTACAACTGA 1326 0.4216 MDQDEKLRKCSNMKCQRVQVDESSVPAHKDEVMEVDHFLAENRNEHVSADGGLDIHAAFNGKDDLEMEVLDGFLDDVEIDDLEGTDVFSGACEEYLFDFEFDSKAEVLGPGPCEGSLLQNSTSESHSSELSGSSSIGAFRNNPHQPSNEDCLYNISLDIPHLHQLDNDNRLAGGILYCKKETGSIEKSQPTALKEKRCRKPTRRYIEESSDSRSKEKVPTAGTKRKHSNVTSCDELHIRIKALRKIRVEKSSNGISDATIPKLKVRRGRPKKEKLYEEEPVSSESEDECLTPKRSKKKDRRKHQRMWTAAEVIKLVDGISEYGVGRWTDIKRFSFSSSSYRTPIDLRDKWRNLLRASSIQTNTIEDQKEDDENDDHGIRPLPSNVACRVRELAKIHPYPRQRGSKNSRSIKHGTSTSVSQSKDSPPICQSKRNVRRKCTYN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241802g00010 441 SMART sant 303 356 IPR001005 -
Stsc241802g00010 441 SUPERFAMILY Homeodomain-like 305 371 IPR009057 -
Stsc241802g00010 441 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 5 137 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 395 441 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 188 230 - -
Stsc241802g00010 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 299 358 IPR017930 -
Stsc241802g00010 441 Gene3D - 293 409 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 402 441 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 115 143 - -
Stsc241802g00010 441 CDD SANT_TRF 305 355 - -
Stsc241802g00010 441 Pfam Myb-like DNA-binding domain 307 354 IPR001005 -
Stsc241802g00010 441 ProSiteProfiles Myb-like domain profile. 299 354 IPR001005 -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 190 230 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 362 383 - -
Stsc241802g00010 441 MobiDBLite consensus disorder prediction 269 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241802g00010 Stsc-Chr241802 38354 42799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241802g00010 307 360 Single Myb Histone (SMH) Gene Family AT1G17520 44.643 3.44e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241802g00010 - - gmx:100810255 537.724