Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241802g00009 ATGGATACATCAGGGACCACATCTCAGAGTTATGTGAAACCCAACAAGAACTGCAATCTGACATCATGGGTTGCTGGCTGTGAACCTGGTTGGGGATGCAGTGTTGGAGGCACTGTTGTTGACCTCAAAAAGGAACTGAATGAGATTCCTTATAGAATTGATAACTGTCAACCTTGTTGTGAGGGCTTCTTTTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTCGGCTCATATTGTCCACTTGGGAAACTCAATACAACCACTTCAACATGTGAACCATATAGCTACCAGATACCTCCAGGAGATCCAAACCATGCATGTGGAAGTGCTGATGTATGGAGTGGTGTTGTAAACAACAGTGATATCTTTTGTGATCCTGGATCATACTGTCCTACTACAACACGTAAAGTCCCTTGTGATCGTGGATATTATTGCAGAAGGGGTTCCCTTCGCCAAAATTCATGCTCCATGTTGAGTTCCTGCAAACCAAACACAGAAAGCCCAAATATGCATGCATATGCTGCTTTGCTTATTATTGCACTCAGTACTCTGCTCATCTTCATTTACAACTGCTCTGATCAAATTCTAGCAACAAGAGAAAAACGAAAGGCGGATTCTAGAGAACGAGCTGCCAAACACGTCAAAGAGATTGCTATAGCTAGAGAAAGATGGCGTGCAGCAAAAGATACCATTACAAAGAGGAAAGGTTTGCAGGAACAGTTTAGGTCCTTTTCGCGCCGAAAATCCATGAAACAGGACAATGCTGCTGCTCCTTCTTCTGTGCCACCAACGGACCCCTCTTCTACCACAACAAAAAAGGAAAGCAACCTCTCCAAGATGATGAATTCTATCGACACCGATTCCAATAGCTCCGAAGGATTCCACTTGAACATTGGAGACAAGAACATGAAGAATAAGCAAGCCCCAAAGGGTAAAAATCTACACACACAAAGCCAGATTCTAAGGTATGCTTATGGCAAGATTGAGAAGGAGAAAGCTCAACAAGACAAGAACTTAACATTCTCTGGAGTTATATCAATGGCTTCTACCGCTGATGAAGAGATTAAATCAAGGCCAGCTATTGAAGTTTCATTCAAGGATTTGACTCTGACCTTGAGAGGGAAAAAGAAGCATGTTCTAAGGTGTGTCACTGGTAAACTCTCGCCTTGTAGAGTCTCAGCTGTGATGGGACCCTCTGGAGCTGGCAAGACCACTTTTCTTTCTGCTTTGGCTGGCAAAGTTAGGGGTTGCACCATGACTGGATCTATTCTCATCAATGGCAAACATGAATCCATTCATTGTTATCAAAAGATTATTGGCTTTGTGCCTCAAGATGATATTGTCCACGGTAACCTGACTGTGGAGGAGAACCTTCGTTTTAGTGCAAGATGCAGGTTGCCGGCCGACATGGCGAAAGCAGATAAGGTTCTGATAATAGAGAGAGTGATAGAGACATTAGGACTCCAAGCAATAAGAGATTCCCTTGTTGGGACAGTGGAAAGGAGAGGAATATCAGGAGGACAAAAGAAGCGTGTGAATGTGGGACTAGAAATGGTGATGGAGCCTTCACTCTTGATACTAGATGAGCCTACAACTGGTCTTGACAGTGCTTCTTCCTCTTTGCTTCTTAAAGCTCTTAGACGTGAAGCCATGGAAGGTGTTAACATTTGCATGGTGCTTCACCAACCTAGCTACACATTGTTCAGAATGTTTGATGATATCATATTTCTAGCCAAAGGAGGGCTTACTGCATATCATGGTCCAGTGAAGAAGGTTGAGGAATACTTTGCAAGTATTGGAATCCCTGTCCCTGACCGTGTGAATCCACCTGATCACTTCATTGATGTTTTGGAAGGTCTTGTGAAGCCTGCTTCTGGTGTCACTTACCAGCAGCTTCCCATCAAATGGATGCTCCATAATGGTTACAACGTTCCACCTGATATGCTTCATGTGATGTCTGAGAATCATGATCCGGAATCTTCCTCGGATCCTGGTGGAAGCAAGGGTGAAGGTGGTGATCATGATGGAGAACATCATTGGGGTGAAGGAACGGCTAGTGTTGAGATTGAGAAAGAACATGTGGACTCTAACTTTCTGGTGATTAAGGATTTGTCCAATCGGAAAACGCCTGGTGTATTTCGACAATATAGATACTATCTTGGCCGGGTTGGTAAGCAGCAACTACGAGAAGGAAAATTACAAGCAGTTGATTATCTACTTTTATTAGTTGCTGGTGCTATCTTAGGAATGCTCACTACTGCAAATGATGAAACCTTTGGTTCCCTTGGATATACATTCACTGTTATTGCTGTCTCTCTACTGTGCAAGATTGCAGCTCTGAGATCATTTTCCCTGGACAAGTTACAATACTGGAGGGAGAGTGCATCTGGGATTAGTAATCTTGCTCACTTTATGTCCAAAGATACGGTTGATCATTTCAACACAATCATCAAGCCAGTGGTGTATCTATCCATGTTCTATTTCTTTAGCAATCCAAGGTCAAGCTTTGCAAGTAACTATGTCATTCTGCTTTGCCTTGTGTACAGTGCTACTGGCATGGCATATATATTAGCAATTTACTTTACTCCTTCTCCTGCACAGCTGTGTTCAGTGCTTTTTCCTGTGGTTATGACTCTGATTGCAAGCCAAAAGAGGGACACGACACTGATGAAGATACTAGCAAAAATGTGCTACCCAAATTATGCATTGGAGGCGTTTGTAGTTGCAAATGCTGAAAGGTACACAGGAGTGTGGCTAATAACACGTTGCAGTTCACTCAAGGCAAATGACTATGATGTGAACGAGTGGGCTATGTGCCTTGTAATCCTCATTCTCTATGGAATCTTTTTCAGAGTTGTCGCATATGGTTGTCTCTTGGCCACACAAAGGAAGTAG 2901 0.4319 MDTSGTTSQSYVKPNKNCNLTSWVAGCEPGWGCSVGGTVVDLKKELNEIPYRIDNCQPCCEGFFCPQGLTCMIPCPLGSYCPLGKLNTTTSTCEPYSYQIPPGDPNHACGSADVWSGVVNNSDIFCDPGSYCPTTTRKVPCDRGYYCRRGSLRQNSCSMLSSCKPNTESPNMHAYAALLIIALSTLLIFIYNCSDQILATREKRKADSRERAAKHVKEIAIARERWRAAKDTITKRKGLQEQFRSFSRRKSMKQDNAAAPSSVPPTDPSSTTTKKESNLSKMMNSIDTDSNSSEGFHLNIGDKNMKNKQAPKGKNLHTQSQILRYAYGKIEKEKAQQDKNLTFSGVISMASTADEEIKSRPAIEVSFKDLTLTLRGKKKHVLRCVTGKLSPCRVSAVMGPSGAGKTTFLSALAGKVRGCTMTGSILINGKHESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLPADMAKADKVLIIERVIETLGLQAIRDSLVGTVERRGISGGQKKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREAMEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGIPVPDRVNPPDHFIDVLEGLVKPASGVTYQQLPIKWMLHNGYNVPPDMLHVMSENHDPESSSDPGGSKGEGGDHDGEHHWGEGTASVEIEKEHVDSNFLVIKDLSNRKTPGVFRQYRYYLGRVGKQQLREGKLQAVDYLLLLVAGAILGMLTTANDETFGSLGYTFTVIAVSLLCKIAALRSFSLDKLQYWRESASGISNLAHFMSKDTVDHFNTIIKPVVYLSMFYFFSNPRSSFASNYVILLCLVYSATGMAYILAIYFTPSPAQLCSVLFPVVMTLIASQKRDTTLMKILAKMCYPNYALEAFVVANAERYTGVWLITRCSSLKANDYDVNEWAMCLVILILYGIFFRVVAYGCLLATQRK 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241802g00009 966 CDD ABCG_EPDR 362 589 - -
Stsc241802g00009 966 SMART AAA_5 391 583 IPR003593 GO:0016887
Stsc241802g00009 966 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 318 956 - -
Stsc241802g00009 966 FunFam ABC transporter G family member 24 359 601 - -
Stsc241802g00009 966 Gene3D - 351 601 IPR027417 -
Stsc241802g00009 966 MobiDBLite consensus disorder prediction 237 251 - -
Stsc241802g00009 966 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Stsc241802g00009 966 Pfam ABC-2 type transporter 563 966 IPR043926 GO:0140359
Stsc241802g00009 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 588 IPR027417 -
Stsc241802g00009 966 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 606 IPR003439 GO:0005524
Stsc241802g00009 966 MobiDBLite consensus disorder prediction 237 279 - -
Stsc241802g00009 966 MobiDBLite consensus disorder prediction 651 683 - -
Stsc241802g00009 966 MobiDBLite consensus disorder prediction 654 683 - -
Stsc241802g00009 966 Pfam ABC transporter 385 533 IPR003439 GO:0005524
Stsc241802g00009 966 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241802g00009 Stsc-Chr241802 34194 37780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241802g00009 396 585 Calmodulin-binding Proteins AT2G36910 28.205 4.43e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241802g00009 - - gmx:100812387 1431