Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241802g00008 ATGAAGTGTTTTCCATTTAACTATGGAGAGAAAAAGGATGATCCTAAGAACTTTCTATCGGTTTCGGGTCGGTCCAACATGTCTACTACTTATGTTGATGGTGAGATGAAGAGATCCGGTTCCGAATCGAATTCTCAGGATGTGTCAGACAACAGCACAGATTCCTTCAGGAGGAATGCATTTCCAAGTATGTCACAAAGACCCAGCAACCTCAGAGTATTCTCTGTATCCGAGCTGAAATCAGCCACCAAGAATTTCAGCCGCTCTGTAATGCTTGGAGAGGGTGGCTTCGGCTGTGTCTACAAGGGACTTATCAAGAAGAGTGGTGATGATCCTTCAACAAAGATTGAAGTTGCAGTCAAACAACTTGGTAAAAGAGGGATTCAGGGGCATAGGGAATGGGTTACAGAAGTGAATGTTCTAGGCATAGTTGAGCATCCTAATCTTGTCAAACTAGTTGGATACTGTGCTGAGGACGATGAAAGAGGAATCCAGAGGCTTCTAGTTTACGAATACATGCCTAAAACAAGTGTTGAACATCATTTATCCCCAAGATCAGAGAGTCCTCTACCATGGATCATGAGATTGAAGATAGCTCAAGATGCAGCTCGTGGCTTAACATACCTGCATGAGCAAATGGATTTTCAGATAATATTCAGAGATTTCAAATCTTCAAATATACTTCTGGATGATGAGTGGAATGCAAAGCTATCTGACTTTGGTTTAGCAAGATTGGGACCATGTGATGGATTAACTCATGTCTCAACTGCTGTAGTAGGAACAATGGGGTATGCAGCACCTGAATATGTTCAAACAGGGCGCCTCACATCAAAGAGTGATGTATGGAGCTATGGAGTCTTCCTTTATGAACTCATTACCGGAAGGCGGCCTATTGATCGGAATAGGCCAAAGGGGGAGCAGGTTCTGTTGGAATGGATAAGACCATACCTCTCAGATGGTAGGAAATTCCAAATAATATTGGATCCAAGGCTTGAGAGGAAGCACCTCTTCAAGTCTGCTCATAGACTTGCCATGGTAGCTACCCGCTGCTTGGTTAGAAATCCCAAGAACCGTCCCAACATGAGTGAGGTCTTAGAAATGCTCAACCAGATCATGGATTCTTATGTTGTAAATGCCAATCCACACAACATTCTAGAATCTTCCCACCATGACACTGAAATAAACAACAAGAAAAGGCTCATGATGGATACAAAACCTGCAGATTGCACTAATTGGTTTAGAATGTGGAGACCAAAGGTCATAAGAGCATGCTGA 1275 0.4282 MKCFPFNYGEKKDDPKNFLSVSGRSNMSTTYVDGEMKRSGSESNSQDVSDNSTDSFRRNAFPSMSQRPSNLRVFSVSELKSATKNFSRSVMLGEGGFGCVYKGLIKKSGDDPSTKIEVAVKQLGKRGIQGHREWVTEVNVLGIVEHPNLVKLVGYCAEDDERGIQRLLVYEYMPKTSVEHHLSPRSESPLPWIMRLKIAQDAARGLTYLHEQMDFQIIFRDFKSSNILLDDEWNAKLSDFGLARLGPCDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQVLLEWIRPYLSDGRKFQIILDPRLERKHLFKSAHRLAMVATRCLVRNPKNRPNMSEVLEMLNQIMDSYVVNANPHNILESSHHDTEINNKKRLMMDTKPADCTNWFRMWRPKVIRAC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241802g00008 424 Gene3D Transferase(Phosphotransferase) domain 1 173 392 - -
Stsc241802g00008 424 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241802g00008 424 FunFam Serine/threonine-protein kinase BIK1 52 172 - -
Stsc241802g00008 424 Pfam Protein tyrosine and serine/threonine kinase 91 368 IPR001245 GO:0004672|GO:0006468
Stsc241802g00008 424 PANTHER OS01G0588500 PROTEIN-RELATED 48 371 - -
Stsc241802g00008 424 Gene3D Phosphorylase Kinase; domain 1 58 172 - -
Stsc241802g00008 424 MobiDBLite consensus disorder prediction 1 64 - -
Stsc241802g00008 424 FunFam Serine/threonine-protein kinase PCRK2 173 382 - -
Stsc241802g00008 424 ProSitePatterns Protein kinases ATP-binding region signature. 92 121 IPR017441 GO:0005524
Stsc241802g00008 424 ProSiteProfiles Protein kinase domain profile. 86 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241802g00008 424 SUPERFAMILY Protein kinase-like (PK-like) 62 368 IPR011009 -
Stsc241802g00008 424 CDD STKc_IRAK 92 371 - -
Stsc241802g00008 424 MobiDBLite consensus disorder prediction 19 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241802g00008 Stsc-Chr241802 30481 32534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241802g00008 1 368 Glycoside Hydrolase AT3G07070 44.591 2.85e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc241802g00008 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241802g00008 - - gmx:100305438 665.611