Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241801g00011 ATGAGGAAGAAAAGGAAAGGAAGTGAGGCGGATGCCTCCGTTCCGCCCAAAGATGTTCTTCCTTCGAAACTGGAGTCGGCGTCTTCGAATTTGAAGTGTCATTACTCGCTGGAAGATTGTTTTAGGCTGAAGAAAAGGTGCAAAGAAGATGCTGACAATGAGCCCGCCTCTTCTTATAAGAGGAGGCTGGCTGGCATTGCGACTGCCCCGCCTTGTGGGACTTCATCATTGATCACGCCGGGGAGAGGTCTCAAGAGGAAGATAGGTTGCATTGATGCTGCTACCCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTTCCTGGTCAAACGATTGGGCAAGGAAAATTTGGCTCTGTTTGGTTGTGCAGATCAAGGGCTAGCGGAGCAGAATTTGCATGTAAGACTCTGAAGAAAGGGGAGGAGACAGTTCATCGAGAGGTTGAGATAATGCAGCACTTGTCTGGACATTCCGGGGTTGTGACACTGCAAGCAGTAGATATCAAACCTGAGAATATTCTGCTCACAGCATCAGGGAAAATAAAGCTTGCAGATTTTGGCCTCGCAATGAGAATTTCAGAAGGTCAGAACTTGACTGGCTTGGCAGGAAGCCCTGCATATGTGGCCCCAGAAGTATTATCAGGCAAATACTCCGAGAAGGTGGATATATGGAGCTCAGGAGTGCTCCTATATGCTCTGTTGGTTGGCAATCTTCCATTTCAAGGGGATTCATTGGAAGCAGTTTTTGAGGCAATTAAGAATGTTAAATTGGATTTTCAAACAGGTGTATGGGCAACAATATCTAAACCTGCACGAGACCTCGTTGAGAGAATGCTAACGAGGGATATTACATCAAGAATAACAGCCGATGAAGTACTTACGCATCCATGGATATCATTCTACACAGAACGTACATTGAAGTCACTGCCCAGCCGAACAAAAATGAAGCACCAAGTCGGTGCATCTTGCGGACGGTTTGTCACCGCCCCTGTAACCAGGTTAGGAAGAAACAGGTTAGGTAACAGCTCCCTTAGCGAGTCTTCGTCCTCTGAGAGTTGCGACTCGGATGATGAGGACGGATGTGTGTTGATCGACGCCCTAGCCACGGCGATCTCGCATGTAAGGATCTCGGAACCGAAGAGGAGCAGGTTGTGTGGTCCCACAGGTCCAATAGTTGAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA 1230 0.474 MRKKRKGSEADASVPPKDVLPSKLESASSNLKCHYSLEDCFRLKKRCKEDADNEPASSYKRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDAATQMGRKKKIEDDYVPGQTIGQGKFGSVWLCRSRASGAEFACKTLKKGEETVHREVEIMQHLSGHSGVVTLQAVDIKPENILLTASGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLSGKYSEKVDIWSSGVLLYALLVGNLPFQGDSLEAVFEAIKNVKLDFQTGVWATISKPARDLVERMLTRDITSRITADEVLTHPWISFYTERTLKSLPSRTKMKHQVGASCGRFVTAPVTRLGRNRLGNSSLSESSSSESCDSDDEDGCVLIDALATAISHVRISEPKRSRLCGPTGPIVEQGSSNMKANNLCKAF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241801g00011 409 SUPERFAMILY Protein kinase-like (PK-like) 99 327 IPR011009 -
Stsc241801g00011 409 SMART serkin_6 107 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241801g00011 409 ProSiteProfiles Protein kinase domain profile. 1 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241801g00011 409 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Stsc241801g00011 409 Gene3D Phosphorylase Kinase; domain 1 95 171 - -
Stsc241801g00011 409 PANTHER SERINE/THREONINE-PROTEIN KINASE 94 166 - -
Stsc241801g00011 409 Gene3D Transferase(Phosphotransferase) domain 1 172 333 - -
Stsc241801g00011 409 Pfam Protein kinase domain 108 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241801g00011 409 Pfam Protein kinase domain 168 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241801g00011 409 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241801g00011 Stsc-Chr241801 85201 87645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241801g00011 107 299 EF-hand Containing Proteins AT2G35890 33.205 2.96e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc241801g00011 Pkinase 3.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241801g00011 - - gmx:100788327 591.652