Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241801g00004 ATGGAATTTGACGAGCACGAAGACCAAGAGGAAGAGGAAATGGGGATCCCGGAGCCGCCGCCTCCGCCGCCGGGTTATGATTCATTCGGAAACTCCGCGCCCAGGTCCAAATCAGAAGGAGGAGGAGGAGCACCCGCCGCCGTGACACCTGGTCGGAAAGGTGGAACTGCCGTCAGGTACAGAGAATGTCAGAAGAATCACGCGGTCAGCATAGGCGGCCATGCCGTCGACGGCTGCTGCGAGTTTCTTGCCGCTGGAGAGGAAGGAACACTGGAGGCTGTGATCTGCGCTGCCTGCAACTGTCACCGCAATTTCCACCGCAAAGAGATCGACGGCGAGACGAGCCCCTACCACCAGAGCAATCCTCGGCCTCAGCAACCACCGCAACCACCTCTGCACCACCACCAGTACCACCAATTCTCCCCATACTACCACCGCGCACCGCCTCCTCCTTCCGGCGGATACCTCCATCTGTCAACTCCGCCGGTGTCGCAGCACCGGCCTTTAGCTCTTCCTCCAGCTGCATCAGGCGGCGGCGGTGGATTCTACAAAGAGGAAGAAGACATGTCAAACCCTAGCAGCAGCGGCGGCGGTGGCGGTGGCGGTAGCGGAAGCGGTTCAAAGAAGAGGTTTAGAACAAAATTCACACAGGAGCAGAAGGATAAGATGCTTGCATTTGCAGAACAGTTAGGGTGGAGAATCCAGAAGCATGATGAATCTGCGGTTGAGAATTTCTGCTCTGAAACCGGTGTGAAGAGACATGTTCTCAAGGTTTGGATGCATAACAATAAGCACACTCTCGGCTGGTGGGTTGAGATGAGAAGGGAGTTTGAGAATGGGCCAAAATGGGCCCTACTTGATCTGAAACGTTACAGGAGATGGGCCTTGATAGGGCTTCCGAATTCATCTCGATCAGAGTAA 921 0.557 MEFDEHEDQEEEEMGIPEPPPPPPGYDSFGNSAPRSKSEGGGGAPAAVTPGRKGGTAVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYHQSNPRPQQPPQPPLHHHQYHQFSPYYHRAPPPPSGGYLHLSTPPVSQHRPLALPPAASGGGGGFYKEEEDMSNPSSSGGGGGGGSGSGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVENFCSETGVKRHVLKVWMHNNKHTLGWWVEMRREFENGPKWALLDLKRYRRWALIGLPNSSRSE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241801g00004 306 MobiDBLite consensus disorder prediction 1 53 - -
Stsc241801g00004 306 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Stsc241801g00004 306 NCBIfam homeobox domain, ZF-HD class 208 264 IPR006455 -
Stsc241801g00004 306 MobiDBLite consensus disorder prediction 1 15 - -
Stsc241801g00004 306 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
Stsc241801g00004 306 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 267 - -
Stsc241801g00004 306 SUPERFAMILY Homeodomain-like 194 267 IPR009057 -
Stsc241801g00004 306 Gene3D - 193 268 - -
Stsc241801g00004 306 Pfam ZF-HD protein dimerisation region 58 110 IPR006456 -
Stsc241801g00004 306 MobiDBLite consensus disorder prediction 112 210 - -
Stsc241801g00004 306 FunFam Zinc-finger homeodomain protein 2 200 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241801g00004 Stsc-Chr241801 45008 51688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241801g00004 7 275 ZF-HD Transcription Factor Family AT4G24660 51.661 2.58e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc241801g00004 ZF-HD_dimer 4.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241801g00004 - - pvu:PHAVU_009G037900g 355.14