Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241798g00004 ATGGCCTCAGAAACAAGAAACTTGGCAGCTAAGGGGGCTGTGATGATGATCATGGTTGCAATCTTAGCGTCATCTAATGTTGTTTTCTGTGACGACAATGCGCCAATTCCACCTCAACCAGAACAAGTGAAAACTTGGTTCAATCAAAACGTGGGTCCATTAAGTCAAAGGAAGAACAGTCTGGACCCTAGTCTGGTGGCGGCCGAGCAAGGCGCTAAGGTTGTGAGGGTAATGCAAGGGGGCGGTGGCGACTTCAAGACCATCACTGACGCCGTTAACAGTGTTCCCTCTGGAAACGCGAAGCGTGTGATTATTTACATTGGACCTGGAATTTACCGTGAGAAGATCAAGATTGAGAGGACTAAGAATTTCATCACGTTTTATGGTGCACCAAGAGGGAACATGCCAACCTTGACCTACGGTGGCACTGCTCAACAATATGGCACTGTTGACAGTGCTACCTTGATTGTTGAAGCAGATTATTTTGTTGCCGTTAACATCATCATAGAGAATTCGGCGCCAAGACCTGATGGGAAAAGGCCTGGAGCACAAGCAGCGGCATTGAGAATATCTGGAGACAAAGCAGCATTTTATTATTGCAAGATGTTGGGATTCCAAGACACAATTTGTGATGATAGGCATAGGCATTTTTTCATGAACTGTATGATTCAAGGCACCGTCGATTTTATTTTCGGAAGTGGCAGGTCACTCTATTTGAACACAGAATTGAGGGTGCTTGGTGATAATGGGATGACAGTGATAGTAGCACAAGCAAGAACAATGGATTCTCAAGACACTGCCTATGCATTTGTCCATTGCCACGTAACTGGGACGGGTACTGGATCTTATTTGGGTAGAGCTTGGATGTCTCATCCCAAAGTGGTTTTTGCTTACTCCGTTATGAGCAATGTTGTCAATCCTCAGGGTTGGAGCGACAACATGCACCAAGAATATGATCGAACATTGTATTTTGGAGAGTATAGAAACACTGGACCTGGAGCAGCTGCTGCTGGGCGCGCCAAGTTCACAAAACAGATGAGTGATGCAGAGGCAAGGCCTTTCCTCACTCTTGCCTTCATTGATGGCTCCAAATGGCTACTTCCTCCCCCAAGGGTCTAA 1119 0.4611 MASETRNLAAKGAVMMIMVAILASSNVVFCDDNAPIPPQPEQVKTWFNQNVGPLSQRKNSLDPSLVAAEQGAKVVRVMQGGGGDFKTITDAVNSVPSGNAKRVIIYIGPGIYREKIKIERTKNFITFYGAPRGNMPTLTYGGTAQQYGTVDSATLIVEADYFVAVNIIIENSAPRPDGKRPGAQAAALRISGDKAAFYYCKMLGFQDTICDDRHRHFFMNCMIQGTVDFIFGSGRSLYLNTELRVLGDNGMTVIVAQARTMDSQDTAYAFVHCHVTGTGTGSYLGRAWMSHPKVVFAYSVMSNVVNPQGWSDNMHQEYDRTLYFGEYRNTGPGAAAAGRAKFTKQMSDAEARPFLTLAFIDGSKWLLPPPRV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241798g00004 372 FunFam Pectinesterase 70 368 - -
Stsc241798g00004 372 SUPERFAMILY Pectin lyase-like 72 366 IPR011050 -
Stsc241798g00004 372 ProSitePatterns Pectinesterase signature 2. 223 232 IPR033131 -
Stsc241798g00004 372 Pfam Pectinesterase 76 362 IPR000070 GO:0030599|GO:0042545
Stsc241798g00004 372 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 366 - -
Stsc241798g00004 372 Gene3D - 69 368 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241798g00004 Stsc-Chr241798 24485 27374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241798g00004 15 372 Carbohydrate Esterase AT1G69940 56.145 9.49e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241798g00004 K01051 - gmx:100786427 532.717