Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241797g00008 ATGGAAACCGAGCTCCCAAACAAGGCCTTAACCACCACGCGCTTTTCGGAGCTGAATCCGCCGCTATCAGAGCATGTTCTCCAAGCCTTATCGGAGTCCGGCTTCGAGTTCTGCACGCCGGTCCAAGCCGCCACCATTCCCTTGCTCTGCAGCTTCAAGGATGTCGCCGTCGACGCCGCCACTGGTTCCGGCAAAACCCTAGCTTTTATCGTCCCTCTCGTCGAGATTCTTCGTCGCTCCTCTTCTAACCCCAAGCCTCATCAGGTATTAGGAATAATCATATCCCCCACAAGGGAGCTGTCAAATCAAATATATCATGTTGCACAGCCTTTCATTTCAACATTAACGAATGTTAAGTCCATGCTGCTGGTTGGTGGGGGTGAAGTGAAATCAGACATGAAGAAGATAGAGGAAGAAGGGGCTAACATACTAATCGGCACACCTGGGCGGTTGTATGACATAATGAATCGGATGGATTTCTTGGATTTCAAAAACTTTGAGATTTTGATTTTAGATGAGGCTGATAGACTCTTAGATATGGGATTTCAGAAGCAGATAACTTCTATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCCGTTGAAGAGCTTGCTAGAGCAGGATTAAGAAACCCTGTGAGGGTTGAAGTTCGGGCAGAGGCAAAACTTTTAAATGCTCCTACAACATCAAAACAACCTGAATCTTCAAAAACGCCTTCTGGCCTTCAAATTGAGTACTTGGAATGTGAGGCAGATAAGAAACCATCACAGCTAGTAGACATCCTTATTAAGAATCGTTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTCCTTCCACGTCTTTCTATTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCGTTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTTCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTGGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCCGTTGTTTTCTTATTGCCAAAGGAGGAGGCTTATGTAGAATTCCTACATATAAGAAGAGTCCCTCTTCAAGAGAGAATATGCTCTGATGATGCACCTGATGTTGTACCTCAGATTCGATCTGCTGCAAAAAAAGATCGTGATGTTATGGAGAAAGGTGTCAGGGCATTTGTTTCTTACGTCCGTGCATACAAGGAGCATCACTGTTCATATATTTTTAGATGGAAAGAACTTGAAATCGGTAAATTGGCCATGGGACATGGATTATTGCAACTTCCTCAAATGCCAGAGGTAAAACATCACTCACTTTCTACTGAGGGATTTGTACCAGTTGATGATATCAATTTGGAAGACATTAAATTCAGGGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAAAGAGAGAAGCCAAAGAGAAGGCGAAAGAGTCAAAACCAGAAAAACCAAGCAAAACACCCAGTGCAGCTACTGTTACGAGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGATTATCGTTTGTTGAAGAAACTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACAGGTGCTGAGGAGTTACTCTGA 1776 0.4324 METELPNKALTTTRFSELNPPLSEHVLQALSESGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFIVPLVEILRRSSSNPKPHQVLGIIISPTRELSNQIYHVAQPFISTLTNVKSMLLVGGGEVKSDMKKIEEEGANILIGTPGRLYDIMNRMDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPTTSKQPESSKTPSGLQIEYLECEADKKPSQLVDILIKNRSRKVIIYFMTCACVDYWGVVLPRLSILKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEEAYVEFLHIRRVPLQERICSDDAPDVVPQIRSAAKKDRDVMEKGVRAFVSYVRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPQMPEVKHHSLSTEGFVPVDDINLEDIKFRDKSREKQRKKNLQAKREAKEKAKESKPEKPSKTPSAATVTRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDENEYAKLTGAEELL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241797g00008 591 Gene3D - 2 227 IPR027417 -
Stsc241797g00008 591 SMART DUF4217_3 413 476 IPR025313 -
Stsc241797g00008 591 MobiDBLite consensus disorder prediction 503 531 - -
Stsc241797g00008 591 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Stsc241797g00008 591 Gene3D - 252 486 IPR027417 -
Stsc241797g00008 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Stsc241797g00008 591 Coils Coil 548 568 - -
Stsc241797g00008 591 SMART ultradead3 34 242 IPR014001 -
Stsc241797g00008 591 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Stsc241797g00008 591 CDD DEADc_DDX55 26 224 - -
Stsc241797g00008 591 CDD SF2_C_DEAD 251 384 - -
Stsc241797g00008 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Stsc241797g00008 591 MobiDBLite consensus disorder prediction 503 557 - -
Stsc241797g00008 591 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Stsc241797g00008 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Stsc241797g00008 591 FunFam RNA helicase 9 227 - -
Stsc241797g00008 591 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Stsc241797g00008 591 SMART helicmild6 290 375 IPR001650 -
Stsc241797g00008 591 PANTHER RNA HELICASE 11 519 - -
Stsc241797g00008 591 Coils Coil 503 525 - -
Stsc241797g00008 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241797g00008 Stsc-Chr241797 50145 54991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241797g00008 22 402 Eukaryotic Initiation Factors Gene Family AT3G13920 30.628 6.58e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241797g00008 K14809 - gmx:100801482 1006.13