Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241797g00006 ATGGGAAGTGGAAGCTCTCCATGTGCTTCATGCAAGCTTCTTAGAAGGAGGTGCGCAAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAAAAGTTCGCCATTGTTCATAAGGTCTTCGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCGGTTCATCAAAGAGCAGATGCAGTGAGTAGTTTGGTGTACGAAGCGAATGCGAGGGTTCGAGACCCGGTGTACGGATGCGTGGGAGCCATATCATACCTTCAAAACCAAGTTTCAGAGCTTCAAATGCAGCTTGCAGTTGCACAGGCTGAGATACTCTGCATCCAGATGCAGCATGAGCCTTCTGTGGCCGCAGCAATGCCTAATAATCCACAACAGATAATGAACTTTCAAGAACACAATAATAATAACAATCATCACCATCATTATCTTAACTTTGCAGCTTCTTCTAGCAATGTAATCCATGATTCTCTCTCTAGAGAGACTTTGTTTGGACATGACATGGTTTCTTAA 519 0.447 MGSGSSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPSVAAAMPNNPQQIMNFQEHNNNNNHHHHYLNFAASSSNVIHDSLSRETLFGHDMVS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241797g00006 172 Coils Coil 86 106 - -
Stsc241797g00006 172 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Stsc241797g00006 172 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Stsc241797g00006 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241797g00006 Stsc-Chr241797 31921 32799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241797g00006 2 118 AS2 family AT2G30130 92.308 5.39e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc241797g00006 LOB 6.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241797g00006 - - rcu:8272084 264.233