Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241794g00015 ATGAACGACCTTCTTACTGATTCGTTTGTTGGTGAAAGTAATCATGGTCAGCCTTCAAGACAAGGTGATATTGAAATGGGAATGCAGGTTCAGAGAAACAACTCTGATTTGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTCGACAAACAAATTGATAAGCTTGCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAAGAATCAAAAGCTGTTACAAAAGCATCTGCTATGAAAGCTATCAAGAAGAGGATGGAGAAGGATATTGATGAAGTTGGAAAGATTGCACACGGTGTCAAAACAAAAATAGAAGCTATAAACAGAGATAACCTAAACAACAGAAAAAAGCCTGGTTGTGAGAAGGGGACGGGTATTGACAGAGCTAGAATGAATATGACAAATTCCTTAACTAAAAGGTTCAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTTGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATTGAAACTGGAAATAGTGAGCAAATCTTCCAGAAGGCAATTTTAGAAGCAGGCCGAGGACAGGTTGTAAGCACGGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAGCTTCTTGATTTGCACCAGATTTATCTCGACATGGCAGTCTTAGTTGACGCTCAGGGAGAGATTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGGGGGACAACGGCACTTCAAGGTGCTAAGAAACTCCAGAAGAACACTCGAAAATGGACGTGCATTGCCATCCTTATACTGTTGATAGTAGTAGCTATAATAGTTGTCGGTGTTCTTCATCCTTGGAAGAGTAGCTAG 924 0.4026 MNDLLTDSFVGESNHGQPSRQGDIEMGMQVQRNNSDLGMEAFNKQIHEVDKQIDKLAGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLNNRKKPGCEKGTGIDRARMNMTNSLTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQGAKKLQKNTRKWTCIAILILLIVVAIIVVGVLHPWKSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241794g00015 307 CDD SynN 39 196 IPR006011 GO:0016020
Stsc241794g00015 307 SMART tSNARE_6 204 271 IPR000727 -
Stsc241794g00015 307 Pfam SNARE domain 245 297 IPR000727 -
Stsc241794g00015 307 MobiDBLite consensus disorder prediction 1 24 - -
Stsc241794g00015 307 FunFam Syntaxin 132 34 163 - -
Stsc241794g00015 307 SMART SynN_4 34 160 IPR006011 GO:0016020
Stsc241794g00015 307 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Stsc241794g00015 307 CDD SNARE_syntaxin1-like 208 269 - -
Stsc241794g00015 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Stsc241794g00015 307 Gene3D - 34 163 - -
Stsc241794g00015 307 Coils Coil 46 76 - -
Stsc241794g00015 307 PANTHER SYNTAXIN 36 291 IPR045242 -
Stsc241794g00015 307 FunFam Syntaxin 132 202 302 - -
Stsc241794g00015 307 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
Stsc241794g00015 307 Gene3D - 203 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241794g00015 Stsc-Chr241794 76093 79832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241794g00015 1 304 SNARE and Associated Proteins AT3G03800 61.184 7.36e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241794g00015 K08486 - gmx:100800991 532.717