Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241794g00009 ATGACATTGATTCATTCAATGGAGGAACCCATTTGCCCAATCGACTCCACCTGCCAAACTCAAATCTCTGCTCTTCTCTCTCCTCCCTCCACTCTTCACCTTCAGGAATATTATCATACCCTTTTGTCTGCAAGGCACTGCAGCTCCATCACTGTCAAACAAGATGCTAACTTTGGCAAAGGGGTATTTGCTGCAATGGACTTCTCTGATGGGGACCTTGTTCTCAGGGACCAAATGCTTGTGGGGTCTCAACACTCTTTCAACAAGATTGATTGTTTTGTATGTAGCTTCTGCTTTCGATTTATCGGTTCCATAGAGCTTCAAATTGGAAGGAGGCTTTACCTGCAGGGATTAAGGGATTCTGAGAGTCATGGCTGTGATGTCGGAAGCTCTTCGGGCTTGTCAAAAAACATCCATGAGATGGATTCATCATCTGATGAGGAGGACGAGGGAACTCAGCAATGTTGTTTCAGCAGTTCCAAAGATAAAACTCCTCTTCCTGAAGGTGTTGTGGAATCTTTAATGAATGGTCAACTGAATTTGCCTTTCTCTAAGGAGTTCTCGTTGCCACCAGTGGTTCCATGCCTGGGTGGATGTGGAGAAGCTTACTATTGCAGCACATCATGTGCAGAGGCTGACTGGGAATCTTCACATTCTTTGCTATGCACTGGCGAGAGGTCTGATCCAGCCCATAGGGAGGCACTTCTTAAATTCTATAAACATGCTAATGAAACAAATGATATATTCATGCTTGCCGCAAAGGCTATTTCTTATACCATATTAAGATACCGCAAGTTAAAAGCAAACTGTCTTGAAGGGAAAATGAAATATGATACTTCCGGTGATTCAAACTACTATAATCTTTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGACTGCGTTGCATTGCCAGATGATATTGATTCTTCCGATGAAGATTCGTTCAGGATGCAAATAAAAGAACTGGCATTCAAGTCACTCCAACTTCTTAAGGCAGCTATATTTGACAAAGAGTGTGAGCCATTATTCTCCCTTGATATCTATGGACACATCATTGGCATGTTTGAGCAGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTAGAGGATTACTTTTTATACATTGATGATCTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTTTAGATGCTCTTGGTGAAGACTATTCTGTTTGTTGCCAAGGAACTGCTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATTGCAGTAAGGTCCATTCGAAAAGGAGAAGAGATAACCATCTCATATGTTGATGAGGACCTTCCTTTTGAGGAGAGACAAGCATCCCTTGCAGACTATGGTTTTAGATGCAGCTGTCTAAAATGCATTGAAGAAGAGCCATAA 1491 0.4205 MTLIHSMEEPICPIDSTCQTQISALLSPPSTLHLQEYYHTLLSARHCSSITVKQDANFGKGVFAAMDFSDGDLVLRDQMLVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQGLRDSESHGCDVGSSSGLSKNIHEMDSSSDEEDEGTQQCCFSSSKDKTPLPEGVVESLMNGQLNLPFSKEFSLPPVVPCLGGCGEAYYCSTSCAEADWESSHSLLCTGERSDPAHREALLKFYKHANETNDIFMLAAKAISYTILRYRKLKANCLEGKMKYDTSGDSNYYNLSLLLEAWRPISMGHKRRWWDCVALPDDIDSSDEDSFRMQIKELAFKSLQLLKAAIFDKECEPLFSLDIYGHIIGMFEQNNLDLVVASPVEDYFLYIDDLKNPDKEEAEKITQPILDALGEDYSVCCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIAVRSIRKGEEITISYVDEDLPFEERQASLADYGFRCSCLKCIEEEP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241794g00009 496 Pfam MYND finger 194 222 IPR002893 -
Stsc241794g00009 496 MobiDBLite consensus disorder prediction 125 163 - -
Stsc241794g00009 496 Gene3D SET domain 388 495 IPR046341 -
Stsc241794g00009 496 SUPERFAMILY HIT/MYND zinc finger-like 197 223 - -
Stsc241794g00009 496 MobiDBLite consensus disorder prediction 125 139 - -
Stsc241794g00009 496 SUPERFAMILY SET domain 46 491 IPR046341 -
Stsc241794g00009 496 ProSiteProfiles SET domain profile. 48 466 IPR001214 GO:0005515
Stsc241794g00009 496 SMART set_7 48 472 IPR001214 GO:0005515
Stsc241794g00009 496 CDD SET_SMYD 414 491 - -
Stsc241794g00009 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 20 495 IPR044237 GO:0008168
Stsc241794g00009 496 Gene3D - 139 227 - -
Stsc241794g00009 496 Pfam SET domain 393 465 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241794g00009 Stsc-Chr241794 44472 48391 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241794g00009 SET 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241794g00009 - - gmx:100803651 771.541