Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241794g00007 ATGAGGCTCCTTCTCTTGTTATGTTGCTTGTTGCATGCTGTTTCTGCACTCAACTATGAAGGGGAGACACTGCTGTCACTCTTGAGGCAGTGGACATGGGTGCCTCCTTCCATAAAATCCACCTGGCAATGGTCTCCGTCTCCCTCTCCCTCTCCATGCTCATGGGCAGGAGTTCAATGTGACCATCATGCCCACCATGTCATCTCTCTTAACCTCCATGCCTTTGGGATTGCTGGTTTCTTAGCACCTCAAATTGGGAATCTCACTATGCTGCGCCATTTGGACCTTGCTTCAAACTCCCTCCATGGCCCAATACCTGACACCTTCAACAACTTGCTCAACTTAAGGTACATAAGCCTCTCTGACAATTTCTTCACAGGCCATTTTCCACCTTCCTTGACTCAACTTTCCCACCTACAAATTGTTCAACTCTCTAACAACAATCTAAACGGTTCCCTCCCCATGAGTATTGGGAACATGACTAACCTTAAGATCCTGTATCTTCATGATAACCAGTTATCTGGGACAGTTCCCTCATCCATTGGCAACTGCACCAGACTGCAAGAATTGTTTCTTAATTCCAATTTGTTGCAGGGTGTTCTACCTCATAGTCTAAACAGCCTCCATGATCTTGCTTATTTTGGTGCTGCCAACAACAGCCTTACTGGTACCGTTCCATTTCCAGTGGGTTCTTGTAATAATTTAGTGTTCTTGGATCTATCATATAATGTGTTTAGTGGAGGCATTCCCTCTGGCTTGGGGAACTGTAGTGGTTTATCAGAATTGGCTCTTGTCAGCTGTAACTTAGTTGGAAGCATTCCACCTTCCTTTGGTCTACTCACCCTTCTTTCTGTTCTACATCTCTCTAATAACCGCTTATCCGGAACAATACCTTGCGAAATGGGCAACTGCAAGTCCTTGATAGAGTTGCAACTGTATTCCAATCAACTGGAGGGAAATATCCCAAGTGATCTTGGGAATTTGAGTAAACTGAAGGACCTTGAGTTGTTTTCCAATCGATTAAGTGGCAAAATTCCGCTGAGCATTTGGAAGATTCAGAGTCTGGAAGATATCCATGTGTATGACAATAACCTCACTGGTGAGCTACCTTTGGAAATGACAGACCTCAAACACCTGAAGAACATCTCATTGTTCAACAACTGCTTCTCTGGAGTCATACCTCAAAACCTGGGAATTAACAGCAGTTTAGTCCAGCTGGACCTTACAAATAATAAGTTCACTGGAACCATCCCACCCAATATCTGTTTTGGCAAGACTTTGAGCTTGCTGACTCTAGGCATCAATCAACTTCAAGGTAGCATGCCTCCTGGTTTGGCAAGTTGTGCAACTCTTACCAGACTGATTCTCAAACAAAATAATCTCACTGGGCCTCTTCCTGAGTTTGAAACCAATCTAAGTCTCACATATATGGACATCAGTAACAACAGAATTGATGGAGCAATTCCACCCAGTTTGGGAAACTGCAGAAATCTCACCACCTTAATTTTGTCCATGAACAAATTTTCAGTGCTTATACCTCCGGAGCTTGGAAAGCTTGTGAACCTTGGAACTTTGGATCTTGCTCACAACAACTTAGAAGGTCCTGTGCCATCTCAGCTGTCAAATTGTGCCAAAATGGACAAGTTTAATGTGGGATTCAATTCCCTAAATGGTTCATTATCATCTAGTTTGAAGAGCTGGACAGGGCTAAGAACGTTGATTTTGACAGAGAATCAATTTACTGGGGGCATCCCAACTTTCCTTGCGAAATTTAAAATGCTTTCTGAATTGCAGCTTGGTGGTAATATGCTTGGAGGTAGCATTCCTGGATCTATTGGAGCATTGCAAAATTTGATCTATGGGTTGAATCTAAGTTCCAATTGGCTGATAGGAGGGATTCCAGCAGAGATTGGAAGCCTGAAAAATTTGCAAATGTTGGATCTATCTCGGAACAACTTGACAGGAAGCATACAAGTTCTTGATGAACTGCCATCATTAGTTGAAATCAATATTTCATACAACTCTTTTAGTGGTCCTGTGCCGAATATGCTAGTGAAGTTGCTAAATTATTCATTGCCATCATTTTTGGGCAATCCTGGACTGTGTATTAGTTGTTCAAATTGCACTGAAAGCAGGTACCTGGAGCCATGCCATATCAAATCACCTAAGCAGAAAGGCCTTAGTAAAGTTGAAATAGTGCTGATAGCAATTGGATCATCCATTTTTGTCACCTTAGTGCTTTATGCGTTTGCTTTTGTTGGGAAGTCAAAGCATGGAGTCAATAATAACAATATTTTCTGTGGAGAGGAGGGCTCTTCCTCTTTACTTAAAGAAGTCATGGAGGCTACAGACAACCTAAATGAACGGTTTGTCATTGGAAGAGGAGCCCATGGAGTTGTCTACAAAGCCCTGCTGGGTCCTAACAAGGCTTTTGCTGTGAAGAAGTTGAGATTTGGTGCAAGCAGAAGTCAGAAGTTGAGCTTGGTGAGAGAGATCAAAACCCTTGGAAGAATCAGGCATCGGAATCTGCTCAAGGTAGAAGACTTTTGGTTGAGAAAAGATTTTGGACTAATCTTGTATAGGTACATGCCAAATGGGAGCCTCCATGATGTGTTGCATGAAAAGAATCCAAGACCAGTAGGCTTAGAATGGATGGTAAGGTATAAGATAGCTCTTGGGATTTCTCATGGATTAGCCTATCTCCATTATGATTGTGATCCTCCCATAGTACACCGAGACATCAAGCCGAAGAATATACTTCTCGACTCTGATATGGAGCCTCATATCGCTGACTTTGGCATTGCCAAACTGTTGGAGGAGTCTGAGTCCTCCTCCTCATCTCTTCCCCTTGGCACAATTGGTTATATTGCACCAGAGAGTGCATATGCAACTACAACTAGCAGGGAGTCAGATGTATATAGTTTCGGGGTAGTCTTGCTTGAGCTCATAACCAGAAAGAAGGCGGCGGATGATGGTGATTTGGTGGGTTGGGTTGGATCCCTCTGGAGAGAAACAGCAGAAATAGGCCACATTGTGGATTCAGAGCTTGCACAAGAATTCATTGACACCCATGTGATGGAGCAAGTTACCAAAGTGCTTATGGTGGCTCTCAGATGCACTCAGCAGGATCCCCACAGCAGACCCCCAATGACACTTGTTACCAATCTCTTATCAGATGCAAATCACCCCACAACTAATACTAATACTAAGGGCTAG 3216 0.4319 MRLLLLLCCLLHAVSALNYEGETLLSLLRQWTWVPPSIKSTWQWSPSPSPSPCSWAGVQCDHHAHHVISLNLHAFGIAGFLAPQIGNLTMLRHLDLASNSLHGPIPDTFNNLLNLRYISLSDNFFTGHFPPSLTQLSHLQIVQLSNNNLNGSLPMSIGNMTNLKILYLHDNQLSGTVPSSIGNCTRLQELFLNSNLLQGVLPHSLNSLHDLAYFGAANNSLTGTVPFPVGSCNNLVFLDLSYNVFSGGIPSGLGNCSGLSELALVSCNLVGSIPPSFGLLTLLSVLHLSNNRLSGTIPCEMGNCKSLIELQLYSNQLEGNIPSDLGNLSKLKDLELFSNRLSGKIPLSIWKIQSLEDIHVYDNNLTGELPLEMTDLKHLKNISLFNNCFSGVIPQNLGINSSLVQLDLTNNKFTGTIPPNICFGKTLSLLTLGINQLQGSMPPGLASCATLTRLILKQNNLTGPLPEFETNLSLTYMDISNNRIDGAIPPSLGNCRNLTTLILSMNKFSVLIPPELGKLVNLGTLDLAHNNLEGPVPSQLSNCAKMDKFNVGFNSLNGSLSSSLKSWTGLRTLILTENQFTGGIPTFLAKFKMLSELQLGGNMLGGSIPGSIGALQNLIYGLNLSSNWLIGGIPAEIGSLKNLQMLDLSRNNLTGSIQVLDELPSLVEINISYNSFSGPVPNMLVKLLNYSLPSFLGNPGLCISCSNCTESRYLEPCHIKSPKQKGLSKVEIVLIAIGSSIFVTLVLYAFAFVGKSKHGVNNNNIFCGEEGSSSLLKEVMEATDNLNERFVIGRGAHGVVYKALLGPNKAFAVKKLRFGASRSQKLSLVREIKTLGRIRHRNLLKVEDFWLRKDFGLILYRYMPNGSLHDVLHEKNPRPVGLEWMVRYKIALGISHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLEESESSSSSLPLGTIGYIAPESAYATTTSRESDVYSFGVVLLELITRKKAADDGDLVGWVGSLWRETAEIGHIVDSELAQEFIDTHVMEQVTKVLMVALRCTQQDPHSRPPMTLVTNLLSDANHPTTNTNTKG 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241794g00007 1071 Gene3D Ribonuclease Inhibitor 468 717 IPR032675 -
Stsc241794g00007 1071 SUPERFAMILY Protein kinase-like (PK-like) 774 1057 IPR011009 -
Stsc241794g00007 1071 PRINTS Leucine-rich repeat signature 283 296 - -
Stsc241794g00007 1071 PRINTS Leucine-rich repeat signature 640 653 - -
Stsc241794g00007 1071 Pfam Leucine rich repeat N-terminal domain 18 61 IPR013210 -
Stsc241794g00007 1071 ProSitePatterns Serine/Threonine protein kinases active-site signature. 909 921 IPR008271 GO:0004672|GO:0006468
Stsc241794g00007 1071 Pfam Protein kinase domain 791 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241794g00007 1071 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 341 1053 - -
Stsc241794g00007 1071 ProSiteProfiles Protein kinase domain profile. 786 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241794g00007 1071 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 388 712 - -
Stsc241794g00007 1071 ProSitePatterns Protein kinases ATP-binding region signature. 792 815 IPR017441 GO:0005524
Stsc241794g00007 1071 Gene3D Ribonuclease Inhibitor 17 177 IPR032675 -
Stsc241794g00007 1071 Gene3D Ribonuclease Inhibitor 178 276 IPR032675 -
Stsc241794g00007 1071 Gene3D Ribonuclease Inhibitor 283 445 IPR032675 -
Stsc241794g00007 1071 SUPERFAMILY L domain-like 31 391 - -
Stsc241794g00007 1071 FunFam Leucine-rich repeat receptor-like kinase 21 132 - -
Stsc241794g00007 1071 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Stsc241794g00007 1071 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Stsc241794g00007 1071 Pfam Leucine rich repeat 473 532 IPR001611 GO:0005515
Stsc241794g00007 1071 Pfam Leucine rich repeat 622 675 IPR001611 GO:0005515
Stsc241794g00007 1071 SUPERFAMILY RNI-like 309 699 - -
Stsc241794g00007 1071 FunFam Leucine-rich repeat receptor protein kinase EMS1 227 306 - -
Stsc241794g00007 1071 SMART LRR_typ_2 401 424 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 160 184 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 519 543 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 280 304 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 640 663 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 185 207 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 88 111 IPR003591 -
Stsc241794g00007 1071 SMART LRR_typ_2 136 159 IPR003591 -
Stsc241794g00007 1071 SMART LRR_sd22_2 328 360 - -
Stsc241794g00007 1071 SMART LRR_sd22_2 640 662 - -
Stsc241794g00007 1071 SMART LRR_sd22_2 519 545 - -
Stsc241794g00007 1071 SMART LRR_sd22_2 184 210 - -
Stsc241794g00007 1071 SMART LRR_sd22_2 160 183 - -
Stsc241794g00007 1071 SMART LRR_sd22_2 88 114 - -
Stsc241794g00007 1071 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 752 862 - -
Stsc241794g00007 1071 Gene3D Transferase(Phosphotransferase) domain 1 863 1070 - -
Stsc241794g00007 1071 FunFam Leucine-rich receptor-like protein kinase family protein 133 226 - -
Stsc241794g00007 1071 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Stsc241794g00007 1071 SMART serkin_6 786 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241794g00007 1071 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 863 1070 - -
Stsc241794g00007 1071 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 307 387 - -
Stsc241794g00007 1071 Gene3D Phosphorylase Kinase; domain 1 761 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241794g00007 Stsc-Chr241794 32073 35332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241794g00007 13 1062 Receptor kinase-like Gene Family AT1G73080 50.458 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241794g00007 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241794g00007 - - gmx:100778035 1342.41