Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241794g00005 ATGATGGAGCCCCTATGTGAATTTTGTGGGGTTGTAAGAGCTGTTGTGTATTGCAACTCGGATTCTGCGCGCCTATGCTTGAACTGTGATGCATCTGTGCACTCTTCCAATCCCCTTTCAACAAGGCATGCACGTTCTCTCCTCTGTGATCACTGCTATTCCCAAGCAGCTGTTATCCGATGTGTGGATCACAACATGTGTGTGTGTGAAGCCTGCGAATGGAACCGGAATGAGTGCTTGTTCTTGGGACACGGTCGCCTGGTTTTGAAGTTCTATACTGGTTGTCCCTCTTTTGGAGACTTGTTTAGCCTTTGGTCCTTTGTGTTTGATGCTAACTCCTCATGTGGTGGTGGTGATTCTGGTTTGGAACCAATTAGTACTACAGTTTCTGGGAATGGAAGCTGCACAAGCAAGTGTGTGGAGCAACCTGATAATGATGATGATTTATTTGAGCCTTGGATGGATCTGTCTCCCATCATTCCATCAAATCCAGATAGCATTCAATTCTGCAGAGATCAAGCACTTTTCTTCCCTCCAGAATCAAAGCAGCCAAAGGGGTGTCCTAATTTTAAGAACCTAGGAATTGAAGAGGGAAATGGTGTATGTGAAGGTCTCACTGTGGATGATGTTATTCAGTTAAACTTTGAAAATGCTGATGAAATTTTTGACTGCTTTCAACTCACAAGTTATAATAATAGCCTTAAGGATGGAGGATTAGACTGTTTATTAATGGATAATAACATATCAATGGCAGAATCTAAATGTCTTACAGAGAGTTCCATTGAGGCATCATCATCAGTCCAACAAGATTGTGAGACCTTTCAGTCTGCAAGCGCAATGCCGGCCATCAACAGTAATGTGAAATCTGCACTTGAGAATCCTATTTACAACAGAGACATCAACCTTGGATTCCCTCATCAGGGCCATGTTCATTCGAGCACATCAATGCAGCTATCCACAATTACTGGGGACAGTAGTGCTACTGATTTAGATTGTGAGTTGTCATCAATGGTTCTCACAGGTGAGGAATCAACTTTGGAGGGTATATGCCCACAGAGAAGGGAAAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGCAAACAAATAAGATATGCATCTCGGAAAGCGAGGGCCGAGACTAGAAAGCGAGTGAAAGGTAGATTTGTTAAAGCAGGAGAGGAATATGATTATGACCCTCTGCTGCAGAATAAGCCTGAATAA 1236 0.4256 MMEPLCEFCGVVRAVVYCNSDSARLCLNCDASVHSSNPLSTRHARSLLCDHCYSQAAVIRCVDHNMCVCEACEWNRNECLFLGHGRLVLKFYTGCPSFGDLFSLWSFVFDANSSCGGGDSGLEPISTTVSGNGSCTSKCVEQPDNDDDLFEPWMDLSPIIPSNPDSIQFCRDQALFFPPESKQPKGCPNFKNLGIEEGNGVCEGLTVDDVIQLNFENADEIFDCFQLTSYNNSLKDGGLDCLLMDNNISMAESKCLTESSIEASSSVQQDCETFQSASAMPAINSNVKSALENPIYNRDINLGFPHQGHVHSSTSMQLSTITGDSSATDLDCELSSMVLTGEESTLEGICPQRREKAKMRYNEKKKTRTFGKQIRYASRKARAETRKRVKGRFVKAGEEYDYDPLLQNKPE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241794g00005 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Stsc241794g00005 411 SMART bboxneu5 1 48 IPR000315 GO:0008270
Stsc241794g00005 411 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Stsc241794g00005 411 CDD Bbox1_BBX-like 5 48 - -
Stsc241794g00005 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 399 - -
Stsc241794g00005 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241794g00005 Stsc-Chr241794 21105 22628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241794g00005 2 404 C2C2-CO-like Transcription Factor Family AT3G21880 39.903 3.05e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc241794g00005 CCT 2.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241794g00005 - - adu:107461934 527.324