Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241793g00003 ATGGCCTTCATCGAGGACGGCATCGACCTCGACGCCTCGGACTTCGCGGCGTCGGTTCCGCTGAAGAAGGTCCCAAACGGTGACGTCTTCGAGGCGTCCAGGGCGGGTGACGTGGACCGCCTCCGCTACCTGCTGGAGTCGGGCGTCAATGTCAACGCCCGCGACCAGTGGGACTCCGTAGCTCTCTACTACGCCTGCCTCGCCGGCCACCTCGACGCCGCCCGCATGCTTCTCGAGAGCGGCGCCATCTGCTCCGAGCACACCTTTGACGGCGACCGCTGCCACTACGCCGCCCTTAATCTCAAGGTCCGCAAACTCCTCAAGGCCTTTGAGGCCCGGCCCCCTCCCTTGGCCCCTTTGCAGGCCGCCCTCCGTGATACCTTCCTTTCCTCCGCCGCTAACCGCTCCTTCTATGACCTCGCAGACACCAACTTTCATCTTCCCGGTATTTCATCCACTCAGGGATCCATTCGCGGCTATTTTCCTCCAGATGTGGTGTTTATTGTACATGGAAGACCTATTGAAGCTCACAGAGTCATATTAAGCGCAAGGTCACCATTTTTCAAGAAAAAGTTTGCGACTGATTGGAAAGATCGCAGGGAAGTGAAATTGCCACGGGAAAAATTGTCATATCCTGCACTCTACAGCCTTATACACTTCTTTTATTCAGACAGATTAGAGGTTGCCGTGGATGACATGGAAGATCTTGTGAGAATCTGCAGAGTATGCAACTGTGAATCACTTCAGAAAATTATCGAGAAAGAAGTCGTTCATCAAAAGTATGCGGAGTATAAAGCATTGAAGGATGTAGATAATTCTCAGAAACGATACATTTTGCAAGGTCNNNNNNNNNNCCCTGCAGCCTTAAGTCGAATCCTTCAAACTGCCCTTTCAAATTCAACCCTTGGAAATGGTCAAGATGATGCAGTTGATAAATTGATTCCTCAGATGGGAGCTATAGAAGTGGGCAGATCTGTTGATGATCTTGCTGATGTATGTGTAAGAGTTGATGGGAAAAATTTTCGTTGCCATCAAGTTGTTCTAGCATCGAGGTCTGAATATTTTAAGACAAGATTGTTGCGTATGAAGGACTTCCATGAAGGGAAAGATGAGTCATATTTGGATTTCCTTCCTTGTATTGAAGAGCATGATTTGAGCACAGAAGCATTTGAGAAAATGATTGAATATATGTACACTGATGGCTTGCAAGATATAAACCCAGATCAGGCTGAGGAAATGTTTGATGTTGCTTCTAGATACTTATTGTTTCCTCTTAAGCGTGCGGTGGCTGATGTGTTGTTGCCACACTTGGAGATGGTGTCACCCGAAGAACTGTGTCACTGGTTAATATTAGCAGACCTGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTCGACACCATTGCTTGTAACTTTGAAACATTTGCTGATACCAAAGAGTTCAGGGCGATGCTGTTGACTCTGCCTCCACCATCCGGAGACTCCTCTCTTCGTACTACTCTCCCAAGCATGCCTGGATCTGATCTAAAATCCGATCAAGGAAACCTTCTCGATGATTTGCGCGAGAAATGGCTTGAAATTGAAGCTGCAGAGCTTGACCAGAGAGATGAGAGTGCATTGCAATTTGATAAGCGGCTCGAGATTCTTATGATTGTCGCCGAGCAAGAAAAATCCGATAATTCAGATGTAGATGCTGATGCTGACGCCGATGGTGTGGATGACCTCAAAACCTTGCCTTTCTCTCCAGACAGCACACTAATTTCAGGTGATGCTGAAAGAACTGTGATAAGTAAACTGGAATCAAATCTATAA 1812 0.4713 MAFIEDGIDLDASDFAASVPLKKVPNGDVFEASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLAPLQAALRDTFLSSAANRSFYDLADTNFHLPGISSTQGSIRGYFPPDVVFIVHGRPIEAHRVILSARSPFFKKKFATDWKDRREVKLPREKLSYPALYSLIHFFYSDRLEVAVDDMEDLVRICRVCNCESLQKIIEKEVVHQKYAEYKALKDVDNSQKRYILQGXXXXPAALSRILQTALSNSTLGNGQDDAVDKLIPQMGAIEVGRSVDDLADVCVRVDGKNFRCHQVVLASRSEYFKTRLLRMKDFHEGKDESYLDFLPCIEEHDLSTEAFEKMIEYMYTDGLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADLYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTLPSMPGSDLKSDQGNLLDDLREKWLEIEAAELDQRDESALQFDKRLEILMIVAEQEKSDNSDVDADADADGVDDLKTLPFSPDSTLISGDAERTVISKLESNL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241793g00003 603 CDD BACK 441 484 - -
Stsc241793g00003 603 SMART BTB_4 163 260 IPR000210 GO:0005515
Stsc241793g00003 603 SMART BTB_4 330 437 IPR000210 GO:0005515
Stsc241793g00003 603 SUPERFAMILY POZ domain 327 436 IPR011333 -
Stsc241793g00003 603 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Stsc241793g00003 603 FunFam BTB/POZ domain-containing protein 157 279 - -
Stsc241793g00003 603 ProSiteProfiles BTB domain profile. 163 230 IPR000210 GO:0005515
Stsc241793g00003 603 MobiDBLite consensus disorder prediction 560 584 - -
Stsc241793g00003 603 FunFam BTB/POZ domain-containing protein 23 146 - -
Stsc241793g00003 603 Pfam Ankyrin repeats (many copies) 31 78 IPR002110 GO:0005515
Stsc241793g00003 603 Gene3D - 2 149 IPR036770 -
Stsc241793g00003 603 Gene3D Potassium Channel Kv1.1; Chain A 162 271 IPR011333 -
Stsc241793g00003 603 Gene3D Potassium Channel Kv1.1; Chain A 320 469 IPR011333 -
Stsc241793g00003 603 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 552 IPR044515 -
Stsc241793g00003 603 Pfam BTB/POZ domain 163 259 IPR000210 GO:0005515
Stsc241793g00003 603 Pfam BTB/POZ domain 328 433 IPR000210 GO:0005515
Stsc241793g00003 603 SUPERFAMILY Ankyrin repeat 30 108 IPR036770 -
Stsc241793g00003 603 SUPERFAMILY POZ domain 161 255 IPR011333 -
Stsc241793g00003 603 CDD BTB_POZ_ZBTB_KLHL-like 329 420 - -
Stsc241793g00003 603 ProSiteProfiles BTB domain profile. 330 406 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241793g00003 Stsc-Chr241793 62235 67599 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc241793g00003 BTB 1.1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241793g00003 K10520 - zju:107409461 877.47