Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241793g00002 ATGGAAGATCTTGTGAGAATCTGCAGAGTATGCAACTGTGAATCACTTCAGAAAATTATCGAGAAAGAAGTCGTTCATCAAAAGTATGCGGAGTATAAAGCATTGAAGGATGTAGATAATTCTCAGAAACGATACATTTTGCAAGGTCNNNNNNNNNNCCCTGCAGCCTTAAGTCGAATCCTTCAAACTGCCCTTTCAAATTCAACCCTTGGAAATGGTCAAGATGATGCAGTTGATAAATTGATTCCTCAGATGGGAGCTATAGAAGTGGGCAGATCTGTTGATGATCTTGCTGATGTATGTGTAAGAGTTGATGGGAAAAATTTTCGTTGCCATCAAGTTGTTCTAGCATCGAGGTCTGAATATTTTAAGACAAGATTGTTGCGTATGAAGGACTTCCATGAAGGGAAAGATGAGTCATATTTGGATTTCCTTCCTTGTATTGAAGAGCATGATTTGAGCACAGAAGCATTTGAGAAAATGATTGAATATATGTACACTGATGGCTTGCAAGATATAAACCCAGATCAGGCTGAGGAAATGTTTGATGTTGCTTCTAGATACTTATTGTTTCCTCTTAAGCGTGCGGTGGCTGATGTGTTGTTGCCACACTTGGAGATGGTGTCACCCGAAGAACTGTGTCACTGGTTAATATTAGCAGACCTGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTCGACACCATTGCTTGTAACTTTGAAACATTTGCTGATACCAAAGAGTTCAGGGCGATGCTGTTGACTCTGCCTCCACCATCCGGAGACTCCTCTCTTCGTACTACTCTCCCAAGCATGCCTGGATCTGATCTAAAATCCGATCAAGGAAACCTTCTCGATGATTTGCGCGAGAAATGGCTTGAAATTGAAGCTGCAGAGCTTGACCAGAGAGATGAGAGTGCATTGCAATTTGATAAGCGGCTCGAGATTCTTATGATTGTCGCCGAGCAAGAAAAATCCGATAATTCAGATGTAGATGCTGATGCTGACGCCGATGGTGTGGATGACCTCAAAACCTTGCCTTTCTCTCCAGACAGCACACTAATTTCAGGTGATGCTGAAAGAACTGTGATAAGTAAACTGGAATCAAATCTATAA 1116 0.4122 MEDLVRICRVCNCESLQKIIEKEVVHQKYAEYKALKDVDNSQKRYILQGXXXXPAALSRILQTALSNSTLGNGQDDAVDKLIPQMGAIEVGRSVDDLADVCVRVDGKNFRCHQVVLASRSEYFKTRLLRMKDFHEGKDESYLDFLPCIEEHDLSTEAFEKMIEYMYTDGLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADLYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTLPSMPGSDLKSDQGNLLDDLREKWLEIEAAELDQRDESALQFDKRLEILMIVAEQEKSDNSDVDADADADGVDDLKTLPFSPDSTLISGDAERTVISKLESNL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241793g00002 371 Gene3D Potassium Channel Kv1.1; Chain A 88 237 IPR011333 -
Stsc241793g00002 371 CDD BTB_POZ_ZBTB_KLHL-like 97 188 - -
Stsc241793g00002 371 MobiDBLite consensus disorder prediction 328 352 - -
Stsc241793g00002 371 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 2 321 IPR044515 -
Stsc241793g00002 371 Pfam BTB/POZ domain 96 201 IPR000210 GO:0005515
Stsc241793g00002 371 SUPERFAMILY POZ domain 94 204 IPR011333 -
Stsc241793g00002 371 CDD BACK 209 252 - -
Stsc241793g00002 371 SMART BTB_4 98 205 IPR000210 GO:0005515
Stsc241793g00002 371 ProSiteProfiles BTB domain profile. 98 174 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241793g00002 Stsc-Chr241793 62235 67599 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc241793g00002 BTB 4.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241793g00002 K10520 - gmx:100812009 544.658