Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241792g00016 ATGAGCGAAGCAGGTGATTCTCCCAAAATGAATGAATTTCCGAAAAAGGGGAAGTCCGTTTTTCCCAAAATGGAGCTCGAAGCAGAAAATTCTTCCAAAACCGGGGTGAAGCCACTCAGCATCCTTAAAACAGAGCCACAAAAATTTCCTGAAAAGGTGCCGCTAGATTTCTCCATGGCGAACACATGGGATTTTCCATTTAAGGCTAACTTTTTTGCCAAGACAGAATCAACAAGTTCCTCACTTGAATCAAAAAAGAGTTTGAGGAGGAAGAGGGATTTGATGAGCCTCTTGTGTAGTTACCCTCTGGACACGAGAATGTTATTTGATGATTTCAATCCACAGCTGTATGATGAGAGGTTGCTGCCAATTAAACTAAAAGGACTTCTTCCAAAGGAGATAATTAGGGATGTTGAAAATGGTGATAGGTCCTGGTCCAGCTCCAGCTTCAGTGATGCCTACTTGGACTCAAGTCCAAAACGTATTCTCAATTTGGCTGCTGATCTTTCTGTCCACCAACTGGTCCAAACATTGATTTCCATCTGCAAAGGTGAAAATTCATACCGTACAAAATTCATTAGATTATCAACCAGAGGTGACGTTGAAAAAAGAAAAGTCATGGCTAAAGTAAGTGCAGCCTTGATGGACAAGCATCATGCGATTGACATTCGTAGTTCATTTCGTGGACCTCTGATTATTGATGCCTCCGGATATCCTACTTCAGAAGCAGAGAAGGAACTTAAACAACGTGTCTGTCAACTACTTCAGCTTTCAACTATTGAAGATGATGACATTCTGTGCACCAGACAGATTGAAGACGAGATGTCAAGAAGCAGGTACCTGGTAATTCTTGTAGATAGGGATGGTGAGGAAATTGTTGATCCAAAAAAACTGGGATTTTGTGGTACTCTACTGTCAGGAGTTTTGGTACTCATTACCACTGACTCACCAGCATCTCAACAGGCTAAAGAAGGAGGATTGATGGATGAGTTAGTGGACTTAGAAATACAGACTAAAGAACATTTGCTACCATGGGTGGTCTTTTGTCACAGTGTGGGGAAGGAGATTGTATATTCATCAACTGGCATCCTGACAACTGCTACGCGCATAGTTGAGGAGTGTTGTTGCCACCTTCATGCAATTGTCCTTGTGGCAAAGTGGTTGAGGAATCATCAAGATGTCAGAAACTGGGAACTTGCTCTCCTCAAATTGCAATGTGCTAATCCTTCATATGATATCCACAATTTTCATGGTTTGAATAGCATCATGATTAACACATTCCTAAACTTAATATGGGATGGAATGAATAAGATGCAACAGAATTGCCTACTGAGCTGTTCAGTCATTCCCAAAATTCAAGATGGCATGCCTGATTTTGATTTGATGAGTCACTGGATGTCTTCTCTCCTTTTGGATCTTGGAGAAACAATAGAGATCCTGACACAGCTTGTAGAAACATCTATCTTTCTTGAATTTGGAAAGTTTGATGATGTTGGATGCAGCCATATTTGGCTACCACAAGAAACCTATCAAATGTTAGAACGGCTATACACCTCATACCCGTTGTTCGTAGAGAAATCGAACCTAGGATTGACTGAACCACCCAACACTGACAAATGGCATAATGCTGTACGGATTGAACTAGCAAGTAATAAAATCTCAGAGCTACCACAGTCCCCAGAATGTCTGCAACTCAAAGTTTTGATGCTGCAAAGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTGTTCACATGCCTCTGCTTTGCATCCTGAATTTATCCTACACTAGTATAAGAGAACTGCCGCGTTCATTTTTCTTTTTGGGGGAGCTTAGAGAACTGTATCTGAAAGGTTGTGAACGCTTCATGAAATTACCACCTGAAATTGGAAATTTGGAGAAACTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTCCCAAAAGAGGTCCAGAAGTTAACCAATATGCAAAGCTTGACCCTCTGCTTCTATGAATATCGTGTCAAGAAGGATAGGCCATATTCTTGTTCAACAATTATTCCTTCTGGCGTGCTATCTAAACTCGAGGGGTTGGAACAGTTAAGTATTGGTGTAAACCCTGATGATGAGCGGTGGAAGGAGAATGTGCAAGTCATTCTACCAGAAATATTGGGATTGGAGGGTTTGCAAACTCTCAGTATGTATATCCCACAAGTGGAACTTTTGAAGCTCATACCGGCCCACATTTTTAAACTTGATTTCAGGTTCATTGTTGGTAATCATATGCAGCGGATTATATCAAGCATACCATCTGCCACTGATGTTGAATTTAAACGAAGTGACCGCAGCTTAAAATATGTAAAAGGTGAGGGTGTCCCGGATGAAATCAAAATGGTTCTTAGACACAGCAAGGCTCTTTTCTTGGATAGGCATTTCACCTTAAAGAGTCTGTCCGAATTTGAAATGAAAAATTTAGAGCAACTACGGGTGTGCATATTGGCAGAATGCAAAGAAATGCAAACAATTGGGGGTGGAGGTGACATGCTTCCGCATTTGCTATTCTTGAGTATATTCCAGATGAAGAATCTAAGAAGCATATGGGAAGGCCCAACTCCCTCTCACTCCTCATTTGGTATGTTACAGTCTTTGTCATTGCAAAGTTGTCCCAAGTTAGTGACTCTCTTCTCTTTGGACTTTCTGGAAAATCTTTCTCTGTTGAAGAAACTTATAGTGAAGGATTGCCCCAAATTAAGTAGATTGATTAGTTGTGAACCATCCAAGAACAATGCACGAAGTTTCCTCCCCAATTTGAGCAAGCTATTTCTTCTCCATCTTCCTGAACTTTGCAGCATTTCAAGCGGGCTGCACATTGGGTCTGGTTTGAAAGAAATAGCATTTTATGACTGTCCTAAGCTGCAGAATCTTACAAGGAAGCAATTGGTAAGCAAAGAACTAACAGCAATCAGAGGAGAAACTAAATGGTGGAAGGCGCTAGAAGGTCGACCGTCTGAGTTTGATCAGATCTTTTCCCCAATTTTTGAAGAGGCTGACTTGATGACTCAGTTAAGTATATATGATGATGACGATATTGATAATGGTTCAGGTGATTTGGGAGGTATGCCGTCAAAGCCCACATGGATTGCAACTAGTGTATCAAATTCACAGACTAGGAAAGGCAAATATAGAAGAAGAAACACAACAATTCGTGAGATAGAGACAAGTTTTCTCGCTGATGATGGATACTCATGGCGAAAATATGGTCAGAAAGAGATCTTAAACTGCAAGTACCCAAGAAATTATTTCAGATGCATTCATAGAAATACACAAGGATGCCACGCCACGAAGCAAGTTCAACAGATTGGCGAGGATCCTCCTTTATATGAAACGGTTTACCGTGGGCAGCATACTTGCCGTGATAGCATACATCCAGTGTCAACCACTATCCTTGGTGTAAACAATCAAGTCGGGAAATGTGATAGCACTGAATCACCAGAATGA 3489 0.4087 MSEAGDSPKMNEFPKKGKSVFPKMELEAENSSKTGVKPLSILKTEPQKFPEKVPLDFSMANTWDFPFKANFFAKTESTSSSLESKKSLRRKRDLMSLLCSYPLDTRMLFDDFNPQLYDERLLPIKLKGLLPKEIIRDVENGDRSWSSSSFSDAYLDSSPKRILNLAADLSVHQLVQTLISICKGENSYRTKFIRLSTRGDVEKRKVMAKVSAALMDKHHAIDIRSSFRGPLIIDASGYPTSEAEKELKQRVCQLLQLSTIEDDDILCTRQIEDEMSRSRYLVILVDRDGEEIVDPKKLGFCGTLLSGVLVLITTDSPASQQAKEGGLMDELVDLEIQTKEHLLPWVVFCHSVGKEIVYSSTGILTTATRIVEECCCHLHAIVLVAKWLRNHQDVRNWELALLKLQCANPSYDIHNFHGLNSIMINTFLNLIWDGMNKMQQNCLLSCSVIPKIQDGMPDFDLMSHWMSSLLLDLGETIEILTQLVETSIFLEFGKFDDVGCSHIWLPQETYQMLERLYTSYPLFVEKSNLGLTEPPNTDKWHNAVRIELASNKISELPQSPECLQLKVLMLQSNADLTKIPSSFFVHMPLLCILNLSYTSIRELPRSFFFLGELRELYLKGCERFMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNMQSLTLCFYEYRVKKDRPYSCSTIIPSGVLSKLEGLEQLSIGVNPDDERWKENVQVILPEILGLEGLQTLSMYIPQVELLKLIPAHIFKLDFRFIVGNHMQRIISSIPSATDVEFKRSDRSLKYVKGEGVPDEIKMVLRHSKALFLDRHFTLKSLSEFEMKNLEQLRVCILAECKEMQTIGGGGDMLPHLLFLSIFQMKNLRSIWEGPTPSHSSFGMLQSLSLQSCPKLVTLFSLDFLENLSLLKKLIVKDCPKLSRLISCEPSKNNARSFLPNLSKLFLLHLPELCSISSGLHIGSGLKEIAFYDCPKLQNLTRKQLVSKELTAIRGETKWWKALEGRPSEFDQIFSPIFEEADLMTQLSIYDDDDIDNGSGDLGGMPSKPTWIATSVSNSQTRKGKYRRRNTTIREIETSFLADDGYSWRKYGQKEILNCKYPRNYFRCIHRNTQGCHATKQVQQIGEDPPLYETVYRGQHTCRDSIHPVSTTILGVNNQVGKCDSTESPE 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241792g00016 1162 SUPERFAMILY WRKY DNA-binding domain 1070 1135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00016 1162 Pfam WRKY DNA -binding domain 1075 1135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00016 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 446 IPR027417 -
Stsc241792g00016 1162 Gene3D Ribonuclease Inhibitor 494 680 IPR032675 -
Stsc241792g00016 1162 Gene3D WRKY domain 1060 1136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00016 1162 SMART LRR_typ_2 587 610 IPR003591 -
Stsc241792g00016 1162 SMART LRR_typ_2 634 656 IPR003591 -
Stsc241792g00016 1162 SUPERFAMILY L domain-like 527 976 - -
Stsc241792g00016 1162 MobiDBLite consensus disorder prediction 1 21 - -
Stsc241792g00016 1162 Pfam Leucine rich repeat 564 621 IPR001611 GO:0005515
Stsc241792g00016 1162 ProSiteProfiles WRKY domain profile. 1069 1132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00016 1162 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 252 973 - -
Stsc241792g00016 1162 SMART WRKY_cls 1074 1136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00016 1162 Gene3D Ribonuclease Inhibitor 684 928 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241792g00016 Stsc-Chr241792 37183 41287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241792g00016 1054 1134 WRKY Transcription Factor Family AT3G56400 50.617 5.65e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241792g00016 WRKY 2.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241792g00016 - - aip:107622712 1640.55