Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241792g00012 ATGGTTCTTAGACACAGCAAGGCTCTTTTCTTGGATCGGCATTTCACCTTAAAGAGTCTTTCTGAATTTGAAATGAAAAATTTAGAGCAACTACGGGTTTGCATATTGGCAGAATGCAAAGAAATGCAAACAATTGGAGGTGGAAGTGCAGGAAACAACGAAGATGTTATGCTTCCGCATTTGCTATTCTTGAGCATATTCCATATGAAGAATCTCAGAAGTATATGGAAAGACCCAGCTCCCCCTCTCTCCTCATTTGGTATGTTACAGTCTTTGTCATTGCAAAGTTGTCCCAAGTTAGTGACTCTCTTTTCTTTGGATTTTGTGGAAAATCTTTCCTTGTTGAAGAAACTTATAGTGAAGGACTGTCCCAAATTAAGTACATTGATAAGTCATGCATCATGGGGGCACGATGCAGATACTTTCCTCCCTAAATTGAGCAAGTTATTGCTTCTCCATCTTCCTGAATTGTCCAGCATTTCAAGTGGTTTGCACATTGGGCCCGGTTTAAAAGAAATAGCATTTTATGACTGTCCAAGGCTGCAGAGTCTTTCAAGGAAGGAATTGGTAAGCAAAGAACTAATGGCAATCAGAGGAGAAACCAAATGGTGGAAGGCGCTAGAGCGTCCACTGCCTGAGTTTGATCGGATTTTTTCCCCAATCTATGAAGAGGCTGACTTGATGACTCAGTTAAGTATATATGACGACGACGATATTGATAATAGTTCAGGTGGCTCGATAGGTAAGCCCTCCCAGCTCAAAGGGGTTGCAACTTATGTATCAAAGTCTCCACATTTGAGTGGCAATGATTCCATGGTAAAAGGGAAAAGGATATCTAGAGTCATGAGGACAATCAGGGTGCCTGCTATCAGCAGCAGAATTTCAGATATCCCTCCTGATGACTATTCATGGAGAAAGTACGGGCAAAAGCCAATTAAAGGTTCTCCTCACCCAAGGGGATACTATAGGTGCATCAGCAAGTCGGGCTGCCCTGCTAGGAAGCAGGTTGAGAGTTGTAGGGACGACCCTAGCATGTTATTGATTACCTATGAAGGGAAGCACAACCACCCTTAA 1074 0.4255 MVLRHSKALFLDRHFTLKSLSEFEMKNLEQLRVCILAECKEMQTIGGGSAGNNEDVMLPHLLFLSIFHMKNLRSIWKDPAPPLSSFGMLQSLSLQSCPKLVTLFSLDFVENLSLLKKLIVKDCPKLSTLISHASWGHDADTFLPKLSKLLLLHLPELSSISSGLHIGPGLKEIAFYDCPRLQSLSRKELVSKELMAIRGETKWWKALERPLPEFDRIFSPIYEEADLMTQLSIYDDDDIDNSSGGSIGKPSQLKGVATYVSKSPHLSGNDSMVKGKRISRVMRTIRVPAISSRISDIPPDDYSWRKYGQKPIKGSPHPRGYYRCISKSGCPARKQVESCRDDPSMLLITYEGKHNHP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241792g00012 357 Gene3D WRKY domain 286 357 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00012 357 ProSiteProfiles WRKY domain profile. 293 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00012 357 SUPERFAMILY WRKY DNA-binding domain 296 357 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00012 357 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 89 357 IPR044810 GO:0003700
Stsc241792g00012 357 SMART WRKY_cls 298 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00012 357 Pfam WRKY DNA -binding domain 300 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00012 357 FunFam WRKY transcription factor 65 282 357 - -
Stsc241792g00012 357 Gene3D Ribonuclease Inhibitor 5 198 IPR032675 -
Stsc241792g00012 357 SUPERFAMILY L domain-like 16 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241792g00012 Stsc-Chr241792 28443 31130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241792g00012 276 357 WRKY Transcription Factor Family AT2G30590 73.171 4.22e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241792g00012 WRKY 3.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241792g00012 - - aip:107622712 435.647