Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241792g00008 ATGAGCAAAGCAGGTGATTCTCCCAAGATGAAGTCAGAGGCAGGAGAGTTTCCCAAAATGGAAGTGAAGCCATTCAATATCCTTATATCGGATACGGATGAATTTCTGAAAAAGGAGAAGTCCGTTTTTCCCAAAATGGAATTGGAAGCAGGTGATTTTTCCAAAACAGAGTTAAAGCCACTCAGTATACTTAAAACAGAGCCAGGAGAATTTCCTAAAAAGGAGCCGCTAGATATCTCCATGAGAATGGCTAAATTTTTTGGCAAAACAAAATCTGAAGGGATCTCAGCTTCTAAGACTAGTACTTTGCAGAGGTTGAAATCACTACTTCCCCCACTTGAATCAAAAATTAGTTTGAGGAGGAAGAAGGATTTGATGAACCTCTTGTGTAGTTACTCTCTGGACGCCAGATTGATATATGATGATTTCAAATCAAGCCCATATGATGAGAGGCGTCTGCTGCTTAAACTTGAAGCATTTCTTCCAAAGGAGATAATAAGGGATGCTGAAAATGGTGATAGGTACGGCTCCAGCTTCGGCTTCGGTGTTGCAGACTTGAACTTCATTCCAGAAGCTATTCTCCATATGGCTGCTGATCTTGCTGTCCACCAACTCATCCAAACATTGATTTCCATTTGTAAAAATGAAAATCCATGCCATATTAAATGCATCAGGTTATCAACCAGAAGCGATGTTGAAAAAAGAACAGTCTTGACAAAAGTAAGTGCAGCCTTGAATGACAAGCATCATGCGCTTGACATTCTTAATTCATTTCGTGGACCTCTGACTATTGATGCCTCCAGATATCCAACTTCAGAAACAGAGAAGGAACTTAAGCAACATATCTGTCAACTACTTCAGCTTTCAACTATTGAAGACGATGACATTTTGTGCACCAGACAGATTGAAGACGAGATGTCAAGAAGCGGGTACCTAGTAATTCTTGTAGATAGGGATGGTGAGGAAATTGTTGATCCACAAAATTTGGGATTATGGGGTACTCTACTGTCAGGAGTTTTGGTATTCATTACCTCTGACTCACCAGCATCTCAACAGAATAAAGGAGGATCGACAGATTGGTTAGTGGACTTGGAAATTCGGACTAACGAACATTTGCTGCCATGGGTAGTCTTCTGTCACAATGTGGGGAAGGAGTTTGTATATTCATCAAATGCCATCCTGACAACTGCACAGCGCATAGTGGAGGAGTGTGGTTGCCACCTTCATGCAATTCTCCTTGTTGCAAAGTGGTTGAAGAATCATCAAGATGTCAGAAACTGGGAACTTTCTCTCCTCAAGTTGCAATGTGCTGATCCTTTACATGATATCCACAATTTTCATGGTTTGAACAGCATCATCATTAATGCATTCCTAAACTTAATATGGGATGAAATGAATAAGACGCAACGAAATTTCCTACTGACCTGTTTAATCATTCCCAAAATTAGAGAAGGCATGGTTGATGACGAATTGATGAATCACTGGATGTCTTCTCTCTTTGTGGATGCTGGAGAAACAGAAAAGATCCTAAGACAGCTTGTAGAAAATTCTATATTTCTTCAATTCAATGGGGTTGGAGGCAGGTATATTTGGTTACCAGAAGAAACCTATCAAATGTTAGAACGGCTATACACCTCATACCCATTGTTTATAGAGAAATCGAACATAGGATTGACTGAACCACCCAACACTGACAAATGGCCTAATGCTGTACGAATTGAATTAGCAGGCAATAAAATCTCTGAGCTACCGCAGTCCCCAGATTGTCCGGAACTCAAAGTTTTGATGCTGCAAAGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTGTTCACATGCCTCTGCTTTGCATCCTGAACTTATCCTACACTAGTGTAAGAGAACTGCCGCGTTCGTTGTTCTTCTTGGGGCAGCTTAGAGAACTGTATCTGAAAGGTTGTGAATGCATCATGAAATTACCACCTGAAATTGGAAACTTGGAGAAACTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTTCCAAAAGAGGTCCAGAAGTTAACCAATATGCAAAGCTTGACACTCTGCTTTTATGAATATCATGCCAAGAAGAACAAGCCATATTCTTGCTCAACAATTATTCCTTCCGGCGTGCTATCTAAACTCAAGAGGTTGGAACATTTGTGTATTGGTGTAAACCCTGATGATGAGCGGTGGAATGAGAATGTGCAAGTCATTCTACCAGAAATATTTGGATTAGAGTGCTTGCAAACTCTCAGCATATATATCCCACAACTAGAACTTTTGAAGCTCATACCGGCCCATATCTTTGAACTTGATTTCAGGTTCATTGTTGGTCGTCATAGGCAGCGGATTATATCAAGCATACCACCCGCCACTGATGTTGAATTTAGACAAAGTGACTGCAGCTTAAAATTTGTAAAAGGTGAGGGTGTCCCAGATGAAATCAAAATGGTTCTAAGACACAGCAAGGCTCTTTACTTGGATCGGCATTTCACGTTAAAGAGTCTATCTGAATTTGAAATGAAAAATATAGAGCAACTACGGGTGTGCATATTGGCAGAATGCAAAGAAATGCTTACAATTGGTGGTGGAGGTGCTGCAAAAGAGGATGCTGATATGCTTCCGCATTTACTATTCCTGAGTTTATTCCACATGAAGAATCTAAGAAGCATCTGGGAGGGCCCAACTCCTCCTTGTAGCTCATTTGGTATGTTACAGTCTTTGTCGTTGCAAAGTTGTCCAAAGTTAACAACTCTCTTCTCTTTGGATTTTTTGGGAAACTTTTCTTTGTTGAAGGAGCTTATAGTGAATGACTGTCCAAAATTAAGTACATTAATAAGTTGTGGATCATCCAAGCATATTGCACATACTTTCCTCCCTAAATTGAGTAAGTTATTGCTTCTCCATCTCCCTGAATTGACCAGCATTTCAAGCGGGTTGCACATTGGACCTGTTTTGAAAAAAATAGCGTTTTATGACTGCCCAAAGCTGTGTAGCCTTTCAGACAATGAATTGGTAAGCAAAGAATTAACAGTAATCAAAGGAGAAACCAGCTGGTGGAAGAATCTAGAAGGTCGACGGTTGAAGTTTGAAAAGATTTTTTCTCCGATCCATGAAGAGGCTGACATGATGACTCAATTAGGTACATTAGAATATGATGATGACAACAATAGTGGTTCAGGTGGCTCAATGGGTGCACCATTACAGCCCACAGGGGATGCAACTCCATTATCATTAAATTCACTGGCTTTGAGTGGCAAGGACTTCCAGAAGCATAGTTTACCAATGTGGCATATAGAGACAGGTCATTCTATGGAGTATGATGGATACATGTGGAGAAAATATGGTAAAAAAGATATTCTGGGCGAGGTGCACCAAAGATCGTATTACAGATGCATTAATCAGAAGGTAGGCGGTTGCCCAGCCAAAAAGAAGATTCAAAGGATTCAAGATGAACCTCCTTTGTACAGAATAACTTACAAGGGGCTTCATACTTGCGGTGCTCCTTCACTGAATGTAGATTTTGTTTGCTTTTCTCCCACAAATTACACCAATCCACATATATCCAGTAACCAGTAA 3594 0.4021 MSKAGDSPKMKSEAGEFPKMEVKPFNILISDTDEFLKKEKSVFPKMELEAGDFSKTELKPLSILKTEPGEFPKKEPLDISMRMAKFFGKTKSEGISASKTSTLQRLKSLLPPLESKISLRRKKDLMNLLCSYSLDARLIYDDFKSSPYDERRLLLKLEAFLPKEIIRDAENGDRYGSSFGFGVADLNFIPEAILHMAADLAVHQLIQTLISICKNENPCHIKCIRLSTRSDVEKRTVLTKVSAALNDKHHALDILNSFRGPLTIDASRYPTSETEKELKQHICQLLQLSTIEDDDILCTRQIEDEMSRSGYLVILVDRDGEEIVDPQNLGLWGTLLSGVLVFITSDSPASQQNKGGSTDWLVDLEIRTNEHLLPWVVFCHNVGKEFVYSSNAILTTAQRIVEECGCHLHAILLVAKWLKNHQDVRNWELSLLKLQCADPLHDIHNFHGLNSIIINAFLNLIWDEMNKTQRNFLLTCLIIPKIREGMVDDELMNHWMSSLFVDAGETEKILRQLVENSIFLQFNGVGGRYIWLPEETYQMLERLYTSYPLFIEKSNIGLTEPPNTDKWPNAVRIELAGNKISELPQSPDCPELKVLMLQSNADLTKIPSSFFVHMPLLCILNLSYTSVRELPRSLFFLGQLRELYLKGCECIMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNMQSLTLCFYEYHAKKNKPYSCSTIIPSGVLSKLKRLEHLCIGVNPDDERWNENVQVILPEIFGLECLQTLSIYIPQLELLKLIPAHIFELDFRFIVGRHRQRIISSIPPATDVEFRQSDCSLKFVKGEGVPDEIKMVLRHSKALYLDRHFTLKSLSEFEMKNIEQLRVCILAECKEMLTIGGGGAAKEDADMLPHLLFLSLFHMKNLRSIWEGPTPPCSSFGMLQSLSLQSCPKLTTLFSLDFLGNFSLLKELIVNDCPKLSTLISCGSSKHIAHTFLPKLSKLLLLHLPELTSISSGLHIGPVLKKIAFYDCPKLCSLSDNELVSKELTVIKGETSWWKNLEGRRLKFEKIFSPIHEEADMMTQLGTLEYDDDNNSGSGGSMGAPLQPTGDATPLSLNSLALSGKDFQKHSLPMWHIETGHSMEYDGYMWRKYGKKDILGEVHQRSYYRCINQKVGGCPAKKKIQRIQDEPPLYRITYKGLHTCGAPSLNVDFVCFSPTNYTNPHISSNQ 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241792g00008 1197 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 298 1006 - -
Stsc241792g00008 1197 SMART WRKY_cls 1111 1173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00008 1197 Gene3D Ribonuclease Inhibitor 534 779 IPR032675 -
Stsc241792g00008 1197 SUPERFAMILY WRKY DNA-binding domain 1108 1174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00008 1197 ProSiteProfiles WRKY domain profile. 1106 1174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00008 1197 SMART LRR_typ_2 614 637 IPR003591 -
Stsc241792g00008 1197 SMART LRR_typ_2 661 683 IPR003591 -
Stsc241792g00008 1197 Gene3D WRKY domain 1101 1175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00008 1197 SUPERFAMILY L domain-like 554 1006 - -
Stsc241792g00008 1197 Gene3D Ribonuclease Inhibitor 799 962 IPR032675 -
Stsc241792g00008 1197 Pfam WRKY DNA -binding domain 1113 1171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241792g00008 1197 Pfam Leucine rich repeat 590 648 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241792g00008 Stsc-Chr241792 16754 21963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241792g00008 1102 1171 WRKY Transcription Factor Family AT5G22570 52.857 2.54e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241792g00008 WRKY 5.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241792g00008 - - aip:107622712 1707.58