Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241791g00003 ATGCCTGAGAAGAATGAGGTGACTTGGACGGCAATGCTTATGGGGTATACTAGGAGTGGGAGGATGAGGGAGGCTTGTGAGATTTTCAAGGCAATGCCGGGGAAGCCTCTTATTGCATGTAATGAGATGATCTTGGGATTTGGACTTGATGGGGAGCTAGATAAGGCAAGATATGTGTTTGAGCAAATGAGGGAGAGGGATGAAGGGAGTTGGAGTGCCATGATTAAGGTTTATGAAAGGAAAGGGTGTGAATTAGAAGCATTGGGTTTGTTTGCTAGGATGCAGAGAGAAGGTGTTGCATTGAATTTCCCCTCATTGATCAGTGTTCTTTCTGTGTGTAGCAGCCTAGCAAGTCTTGACCATGGGAGACAGGTTCATGCTCAGTTGGTGAGATCCAAGTTTGATCAAGATTTGTATGTTGCCTCTGTGTTGATCACAATGTATGTTAAGTGTGGTGATCTTGTGAAAGGCAAACAGGTTTTTGACAGATTTCCTTTGAAAGATGTAGTTATGTGGAATTCTATGATCACAGGTTATTCCCAGCATGGTTTGGCAGAGGAAGCTTTAGATGTCTTCCGTGACATGTGCTCATTGGGAGTTCCACCAGATGACGTTACCTTTGTCGGAGTTCTTACAGCTTGTAGCTACAGTGGCAAGGTGGAACAAGGGACTGAAACTTTTGAGTCAATGAAATGCAAATATCAAGTGGAACCAGGAATTGAACACTATGCTTGCATGGTTGATTTGCTGGGTCGAGCAGGCAAGCTAACTGAAGCAATGAGCCTAATAGAAAAGATGCCAATGGAACCAGATGCAATTGTTTGGGGTTCGCTGTTAGGTGCATGTAGAACCCACATGAAGCTGGATTTGGCTGAAGTCGCAGTGGAGAAGCTTGCACAGCTAGAGCCCAAAAATGCTGGGCCTTATGTCCTGCTCTCACATATGTATGCCACCAAAGGAAGATGGAGGGACGTTGAAGTCCTTAGGGGAAAAATAAAAGGCAGGAGTGTTATCAAATTGCCTGGTTGTAGTTGGATTGAGGTGGAGAAGAAGGTACATATGTTCACAGGGGGAGACAGCAAGGGCCACCCTGAACAACCTGTTATTATGAAAATGTTGGAGAAGTTAGGTGGATTGTTAAGGGAAGCTGGGTACTGTCCTGATGGTAGCTTTGTGCTACATGATGTGGATGAGGAAGAGAAGACACATAGCTTGGGTTATCATAGTGAAAAACTAGCTGTAGCATATGGTCTCCTAAAAGTGCCTACTGGGATGCCAATTAGAGTCATAAAAAATTTGCGGATGGGTACTGTTCTTGCAAGGATTATTGGTGATTTCTGGAAACAAATCTTTACATATGACCATGAACTTGAGGAGTCTATTGGAATAGCAAGGCTGCTTTGTCTTTGTCAGGCTGTCTCGATGCTCCAAGCCTGTGTTGCTATTAAAATGGACGGAATGTCTGTGTTCAATTTCAAAGAAATGGTCATCGATACTAAAGCTCTGACAATTTTAGCTGCTCAAAGAGTGAATGCATTGTTACAAATCAAGAAAAGTTTGATTGATCCCTTAAACCATTTCTGGAACTGGAATAAAGGTGATCCATGTGCATCAAGTTGGAATGGGGTCTTGTGTCCTCTAAATGCTGGGGCTGATGGTCATTTCCATGTCAAAGAGCTCTACTTAATGACTATGAATCTCTCTGGAAGCTTGGCACCCCAACTTGGTCAACTATCTCAACTAGAGATAATGAACTTCATGTGGAATAACTTAACAGGAACTATACCCAGGGAGATAGGAAATATCACATCATTGAGACTCTTGCTCCTGAATGGTAATGCATTATCAGGTAATTTACCATATGAGCTTGGAAATCTTCAAAATCTAAACAGATTCCAAGTTGATCAAAACCGACTCTCGGGTCCAATACCGCCATCATTCGCCAACTTGAGCTCTGTCAAGCACATCCACATGAACAACAACTCATTTAGTGGTCAAATTCCTCCCAATCTTTCAAACATGTCCAATGTTCTTCACCTGCTTCTGGATACAAATAATTTATCTGGCTATCTTCCACCAGAATTCTCCATGTTACCCCAGCTTCGTATACTCCAACTTGATAACAATCACTTCACAGGGAGCAGAGTTCCTTCTTCCTATGCAAACTTATCTAGATTAGCAAAATTAAGTCTCAGAAACTGCAGTTTGCTAGGAGAAGTACCTGATCTCAGTTCAATACCACAGCTTTACTATTTAGATCTTAGCTGGAACAATCTTATTGGACCGATACCATCGAAAAAACTTGCAGAAAATATGACTACTATTGATCTTTCTAATAACAATCTGAATGGATCAATTCCTGGATACTTCTCAGAACTTCCTTCTCTTCAAAGACTGTCTCTTGAGAACAACTTCTTATCAGGATCAGTCTCTGCTGACATATGGCAGAAGATGAATCTCAGTACTAGTGCTAAATTTACAGTCGATCTGCATAACAACTCACTTTCAAGAATTTTGGGAGATCCAAGTCCTCCACCCAATGTCACCTTAAGGCTTGGTGGAAATCCTGTATGTAAGGGTTCCGAAGCTAGCGAAATATTGGCTAAACAATGTGGATTTGGAGGAGAAGAAGCAGACAATTACTTAACAAATTCAACAACTACATGTCCTCATCAAGCTTGTTCAGTGAATGATTTCTATGAATATGTTCCAGATTCACCTATTCCCTGCTTTTGTGCATCTCCTCTTAAAATTGGATACCGGCTGAAAAGCCCGAGTTTTTCTTTCTTCCCTCCATACAAAGCTTCATTTAGATCATATGTTACCCATGCTTTGAACTTGGACTTCTATCAACTCTCAATAGATTCATATTCTTGGGAAAAAGAACAAACTCGTCTTAGGATGTATCTGAAACTTTATCCTGTGGCTAGTTATTCACACAATGAGTTCAATGCAACTGAGGTCTATCGTCTGCGAAGCATATTCTCGTCATGGAATTTCGGTGGAAGTGATTTTTATGGGCCATATGAACTTCTGAATTTCACCCTTGAGGGACCTTATGCATATTTAATTACAAAATCAGAAAAGAGCAAAAGTAGTACAATGGAAATAATTTTTGCTGTGGTAGCAGCTGTGGCTGTTGTTGTAGCAATCTCTGCATTAGTAGCTCTCATAATTGTAAGAAGAGGTATCAAAAACCAGCACACGTTTTCAAGAAGACGTCCATCCTCTAGTATTCCTATCAAAATAGATGTCTCGTTGATTGGATATTGTGATGAAGAAGGGGAGCAGATGCTTGTTTATGAATTTATGTCTAATGGCAACTTGAGGGATTGGCTTTCAGGCACAAAGGGAAACTTAACCTTTGGTATGAGATTGCGCATCGCAATCGGTTCGGCCAAAGGAATACTATATCTACATACTGAGGCTAATCCTCCAATATTCCATCGAGATATCAAAGCAAGTAACATACTCCTGGACTCCAAGATCATTGCTAAAGTTGCAGATTTTGGACTGTCGCGGCTTGCACCGCACCCAGATGAAGGGAATGAACATAAATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACCTGGATCCAGAGTACTTCTTGACTCATAAATTGACAGATAAGAGTGATATCTATAGTCTCGGAGTTGTGTTTATGGAGCTTTTGACAGGCATGCAGCCAATATCTCATGGGAAGAACATTGTCCGCGAGGTGAATATGGCTATTAATTCTGGCATGATATTTTCCATCATAGACAGTAAAATGGGTTCTTACCCCTCAGATTGTGTTGAGAGGTTCTCATCTCTGGCTCTAAGTTGTTGCCATGAAGTTACTCAGAAGAGACCATCAATGCTTGATGTTGTAAGGGAGCTCGAAAAGATCGCCGCAATGCTGACCGGAACAGAAGCTTCTTTCTCAGATACTGCTTTCCATAATGACAGTTCAGTGCAATCATCATCATCATCATTCATGGTGAGTAAGGACCACCAAGGATCATCTTCATCTGCCTCAGAAATTTGCCTTGTTAGTGGTGCCATTTCAACTATATTTCCACGTTGA 4071 0.4137 MPEKNEVTWTAMLMGYTRSGRMREACEIFKAMPGKPLIACNEMILGFGLDGELDKARYVFEQMRERDEGSWSAMIKVYERKGCELEALGLFARMQREGVALNFPSLISVLSVCSSLASLDHGRQVHAQLVRSKFDQDLYVASVLITMYVKCGDLVKGKQVFDRFPLKDVVMWNSMITGYSQHGLAEEALDVFRDMCSLGVPPDDVTFVGVLTACSYSGKVEQGTETFESMKCKYQVEPGIEHYACMVDLLGRAGKLTEAMSLIEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYATKGRWRDVEVLRGKIKGRSVIKLPGCSWIEVEKKVHMFTGGDSKGHPEQPVIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPTGMPIRVIKNLRMGTVLARIIGDFWKQIFTYDHELEESIGIARLLCLCQAVSMLQACVAIKMDGMSVFNFKEMVIDTKALTILAAQRVNALLQIKKSLIDPLNHFWNWNKGDPCASSWNGVLCPLNAGADGHFHVKELYLMTMNLSGSLAPQLGQLSQLEIMNFMWNNLTGTIPREIGNITSLRLLLLNGNALSGNLPYELGNLQNLNRFQVDQNRLSGPIPPSFANLSSVKHIHMNNNSFSGQIPPNLSNMSNVLHLLLDTNNLSGYLPPEFSMLPQLRILQLDNNHFTGSRVPSSYANLSRLAKLSLRNCSLLGEVPDLSSIPQLYYLDLSWNNLIGPIPSKKLAENMTTIDLSNNNLNGSIPGYFSELPSLQRLSLENNFLSGSVSADIWQKMNLSTSAKFTVDLHNNSLSRILGDPSPPPNVTLRLGGNPVCKGSEASEILAKQCGFGGEEADNYLTNSTTTCPHQACSVNDFYEYVPDSPIPCFCASPLKIGYRLKSPSFSFFPPYKASFRSYVTHALNLDFYQLSIDSYSWEKEQTRLRMYLKLYPVASYSHNEFNATEVYRLRSIFSSWNFGGSDFYGPYELLNFTLEGPYAYLITKSEKSKSSTMEIIFAVVAAVAVVVAISALVALIIVRRGIKNQHTFSRRRPSSSIPIKIDVSLIGYCDEEGEQMLVYEFMSNGNLRDWLSGTKGNLTFGMRLRIAIGSAKGILYLHTEANPPIFHRDIKASNILLDSKIIAKVADFGLSRLAPHPDEGNEHKYVSTVVKGTPGYLDPEYFLTHKLTDKSDIYSLGVVFMELLTGMQPISHGKNIVREVNMAINSGMIFSIIDSKMGSYPSDCVERFSSLALSCCHEVTQKRPSMLDVVRELEKIAAMLTGTEASFSDTAFHNDSSVQSSSSSFMVSKDHQGSSSSASEICLVSGAISTIFPR 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241791g00003 1356 Pfam Protein tyrosine and serine/threonine kinase 1085 1295 IPR001245 GO:0004672|GO:0006468
Stsc241791g00003 1356 Gene3D Ribonuclease Inhibitor 506 764 IPR032675 -
Stsc241791g00003 1356 FunFam Os03g0317100 protein 105 221 - -
Stsc241791g00003 1356 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 507 668 - -
Stsc241791g00003 1356 Gene3D Tetratricopeptide repeat domain 104 219 IPR011990 GO:0005515
Stsc241791g00003 1356 Pfam Leucine rich repeat 747 804 IPR001611 GO:0005515
Stsc241791g00003 1356 Pfam Leucine rich repeat N-terminal domain 508 545 IPR013210 -
Stsc241791g00003 1356 Gene3D Ribonuclease Inhibitor 765 915 IPR032675 -
Stsc241791g00003 1356 Gene3D Tetratricopeptide repeat domain 1 103 IPR011990 GO:0005515
Stsc241791g00003 1356 Gene3D Tetratricopeptide repeat domain 220 403 IPR011990 GO:0005515
Stsc241791g00003 1356 Pfam PPR repeat family 167 214 IPR002885 -
Stsc241791g00003 1356 SUPERFAMILY Protein kinase-like (PK-like) 1085 1330 IPR011009 -
Stsc241791g00003 1356 FunFam Pentatricopeptide (PPR) repeat-containing protein 231 395 - -
Stsc241791g00003 1356 SMART serkin_6 1032 1302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241791g00003 1356 Pfam DYW family of nucleic acid deaminases 384 436 IPR032867 GO:0008270
Stsc241791g00003 1356 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 1104 1311 - -
Stsc241791g00003 1356 PANTHER RECEPTOR-LIKE PROTEIN 55 516 1300 - -
Stsc241791g00003 1356 Gene3D Transferase(Phosphotransferase) domain 1 1070 1334 - -
Stsc241791g00003 1356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1147 1159 IPR008271 GO:0004672|GO:0006468
Stsc241791g00003 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Stsc241791g00003 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Stsc241791g00003 1356 ProSiteProfiles Protein kinase domain profile. 1009 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241791g00003 1356 SUPERFAMILY L domain-like 521 859 - -
Stsc241791g00003 1356 Pfam E motif 285 347 IPR046848 -
Stsc241791g00003 1356 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Stsc241791g00003 1356 Pfam PPR repeat 7 34 IPR002885 -
Stsc241791g00003 1356 Pfam PPR repeat 243 267 IPR002885 -
Stsc241791g00003 1356 Pfam PPR repeat 70 99 IPR002885 -
Stsc241791g00003 1356 Pfam PPR repeat 40 66 IPR002885 -
Stsc241791g00003 1356 NCBIfam pentatricopeptide repeat 70 102 IPR002885 -
Stsc241791g00003 1356 NCBIfam pentatricopeptide repeat 7 32 IPR002885 -
Stsc241791g00003 1356 NCBIfam pentatricopeptide repeat 39 67 IPR002885 -
Stsc241791g00003 1356 NCBIfam pentatricopeptide repeat 170 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241791g00003 Stsc-Chr241791 11269 22539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241791g00003 1085 1298 Receptor kinase-like Gene Family AT5G01950 69.907 4.65e-89 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc241791g00003 PK_Tyr_Ser-Thr 4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241791g00003 - - adu:107485396 827.78