Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241790g00004 ATGTCTGGTGGAACGAAGGGAGAACACCACCAAACGGTTCCGCTATCGGTGTTGCTGCAGCGTGAATTGGCGAGCGAGAAGATCGAGAAGCCAGAGATTGTTTCAGGGCAAGCAGGGCAGAGCAAGAAAGGGGAGGATTTCACCCTCATCAAGACTGAATGCCAGAGGGTTGTGGGAGATGGGGTCTCCACATTTTCTGTTTTTGGGGAGAATCTTCTAAATAATGTTTTAAGTGCGGTTCCTCCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCATTAGTTGCAGGCTTTGTAAAAACTGACAAAGATTTTCAGGAGAAAGGACAAAAATCTGGAACAACTGTAACCTTTGTGATTATAGAAGGATGGGTTGTAACTGTTGCATCAGTTGGTGATTCACGTTGCGTACTTGAATCTGGTGAAGGTGGGCTTTATTATTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGCATCACCTCTAGTGGGGGTGAGGTTGGCCGGCTAAACACTGGTGGAGGCACAGAGGTTGGGCCTTTAAGATGTTGGCCTGGAGGCTTGTGTCTTTCACGGTCAATTGGCGATATGGATATTGGTGAATTTATTGTCCCAGTTCCGTATGTAAAGCAAGTGAAGTTGTCCACCGCTGGAGGCAGGCTAGTTATCTGCAGTGATGGGGTTTGGGATTCTCTATCTGCGGAAGCAGTCTTAGATTCTTGTCGTGGCATGTCAGCAGATACAGCAGCATCACATATTGTTAAAGAAGCTGTAGAAGCAAAAGGACTTAGAGATGACACAACCTGCATCGTTGTTGATATATTACCTCAGGAGAAGCCACCTGCTCCTGCACCACAACGAAAAAAGAAAGGAATAATGAAGTCCATGTTTCGTAAAAAGTCATCTGAGTCGTCTTCTTATAATGATAAAGATTACCTGGAGCCAGATGTGGTAGAGGAATTGTACGAAGAAGGATCTGCTATGCTTTCCGAGAGGTTAGATACAAAATATCCGCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATGAAACCCGGGGAGGGCGTTTCAATATTTGAGGGTGCACCCAACCCTCGGAAACTGCGTCCTTGGGATGGGCCTTTCCTTTGCACGAGTTGTCAAGATAAGAAAGAAGCCATGGAAGGCAAAAAAGCATCAGGTAGACACAGCAGTGGAAGTGATGATGATTAA 1248 0.4583 MSGGTKGEHHQTVPLSVLLQRELASEKIEKPEIVSGQAGQSKKGEDFTLIKTECQRVVGDGVSTFSVFGENLLNNVLSAVPPDLNRDEWVAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESGEGGLYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSTAGGRLVICSDGVWDSLSAEAVLDSCRGMSADTAASHIVKEAVEAKGLRDDTTCIVVDILPQEKPPAPAPQRKKKGIMKSMFRKKSSESSSYNDKDYLEPDVVEELYEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEMKPGEGVSIFEGAPNPRKLRPWDGPFLCTSCQDKKEAMEGKKASGRHSSGSDDD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241790g00004 415 PANTHER PROTEIN PHOSPHATASE 68 280 IPR015655 GO:0004722|GO:0006470
Stsc241790g00004 415 Pfam Protein phosphatase 2C 92 266 IPR001932 -
Stsc241790g00004 415 ProSiteProfiles PPM-type phosphatase domain profile. 30 281 IPR001932 -
Stsc241790g00004 415 FunFam probable protein phosphatase 2C 12 35 287 - -
Stsc241790g00004 415 SMART PP2C_4 24 279 IPR001932 -
Stsc241790g00004 415 CDD PP2Cc 34 281 IPR001932 -
Stsc241790g00004 415 Gene3D - 35 287 IPR036457 -
Stsc241790g00004 415 SUPERFAMILY PP2C-like 36 281 IPR036457 -
Stsc241790g00004 415 MobiDBLite consensus disorder prediction 287 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241790g00004 Stsc-Chr241790 30212 35410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241790g00004 5 413 PP2C-type Phosphatase Gene Family AT1G47380 76.347 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241790g00004 - - gmx:100816201 692.189