Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241788g00009 ATGGAAAACATGCCACCGGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCGGAACAAGCTTGAAGGAGTGAGGGAGGACATGAACCGGGTTATTCCAGTTCTTGACATATATGAATATAGTCCAAGCCAACTCCCACAAATATCAGGAGAAGCAAGTGTTGGAGATAGCGAGCAGTGGTTCTTTTTTATTCCGCGGCAAGAAAGCGAAGCGCGTGGAGGGAGGCCGAAGAGGCTCACAACAACCGGGTACTGGAAGGCCACCGGCTCCCCTAACCATGTTTTCTCTTCCGATAATCGCGTCATCGGAATGAAGAGAACGATGGTTTTCTACTGCGGGAGAGCTCCTAACGGAACAAAGACTGACTGGAAGATGAATGAGTATAAAGCCATTGACCTTCATCATGCCTCATCGTCTTCTTCCTCCTCTAACAAGCCTGTTCCTATGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAGAAAACAAAGTGCTTAAGAGCATTTGATAGAAGACCACCTCCAAGAAGCAGGGATACATATCCTCCTAACCAGAACAACGCTTCATCAACATCATCCTTTGATCATCATCATTATACCAATCAAACGGTGGAGAGATCATCAGGTGCTGCAAGCTCACCGGAGAGTTCATGCTCCGAAGAACATCAAACGGAGGATGTGGAAAACGCTAATAGCGAGCCATTTCTGGATTGGGAGAAAATCGATTGGTTCTTAGGATCTTCTTCAACCACGGAACCATGA 777 0.462 MENMPPGYRFYPTEEELISFYLRNKLEGVREDMNRVIPVLDIYEYSPSQLPQISGEASVGDSEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVFSSDNRVIGMKRTMVFYCGRAPNGTKTDWKMNEYKAIDLHHASSSSSSSNKPVPMLRQEFSLCRVYKKTKCLRAFDRRPPPRSRDTYPPNQNNASSTSSFDHHHYTNQTVERSSGAASSPESSCSEEHQTEDVENANSEPFLDWEKIDWFLGSSSTTEP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241788g00009 258 MobiDBLite consensus disorder prediction 186 223 - -
Stsc241788g00009 258 MobiDBLite consensus disorder prediction 173 240 - -
Stsc241788g00009 258 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Stsc241788g00009 258 ProSiteProfiles NAC domain profile. 4 167 IPR003441 GO:0003677|GO:0006355
Stsc241788g00009 258 SUPERFAMILY NAC domain 2 167 IPR036093 GO:0003677|GO:0006355
Stsc241788g00009 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 224 - -
Stsc241788g00009 258 Gene3D NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241788g00009 Stsc-Chr241788 35686 37335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241788g00009 7 248 NAC Transcription Factor Family AT5G22380 52.675 3.12e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241788g00009 NAM 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241788g00009 - - gmx:100800056 349.747