Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241788g00003 ATGGCAGCTCTTCGGAGAATGATTGGCTTCGGGTCGAACAGAACTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGGGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGTACACGACGGAGAAAGGATTGACAGATGCTTTCTCCGGTTGCGGACAAATAATTGAAGCTAAAATCATAACAGACAAGGTATCAGAGAGATCTAAAGGGTTTGGGTTCATCACCTTTGCTTCACGAGACGAGGCTGAAAATGCCGTTTCACAGATGAATGGGAAGGCACTAAATGGCCGTGTTATCTTTGTTGATTATGCCAAACCAACTTTTTCCAAGAATAGTGGAATGCCCATTGCAAGAGGGCCCCCTGAGCCTGAAGTCCCACAGTTGAGAGTTAATTTCCCGTAG 408 0.4657 MAALRRMIGFGSNRTLTPPSLLTFRRGIAFKLFVGGLSVYTTEKGLTDAFSGCGQIIEAKIITDKVSERSKGFGFITFASRDEAENAVSQMNGKALNGRVIFVDYAKPTFSKNSGMPIARGPPEPEVPQLRVNFP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241788g00003 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 110 - -
Stsc241788g00003 135 SMART rrm1_1 31 104 IPR000504 GO:0003723
Stsc241788g00003 135 MobiDBLite consensus disorder prediction 114 135 - -
Stsc241788g00003 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Stsc241788g00003 135 Gene3D - 26 125 IPR012677 -
Stsc241788g00003 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Stsc241788g00003 135 SUPERFAMILY RNA-binding domain, RBD 30 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241788g00003 Stsc-Chr241788 7154 8606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241788g00003 30 107 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 6.65e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241788g00003 - - pvu:PHAVU_001G192800g 183.341