Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241787g00003 ATGGATCGAACAGCTCTCCCTTCCTCCNNNNNNNNNNCCGTCAACCGCCGCAGGATCGAGATCGACCGCGCCGAGAACGCGATCCAGCTCGCTATGACGCGCCTCGAGGAAGAGCTCCGCCACCTCCTCATCCGGAGCACCGTCCCTCTTGACGCAGAGAGCCTCCACGGTTCCATCCGCCGTGTTTCCCTCTCCTTCGCTGACGGCGGTACCGTCGACGAAAATCTCGAGAGCTTCGGCGAGGTCAACGACCAAGGCGGCGACTCCCAGCGGTTCCACGAGCGCGGCGCCAGCCTCGGCGACATCTCAATCGATCTCCTCCGCTCTGACGCGGTTGCGGAACTCAGAGAAATCGTCGATCGCATGGTTAGGTCAGGTTACGAGAAGGAGTGCCTTCAGGTATATAGTAGTGTTCGTCGTGATGTTTTGGATGAATATTTATCAATTCTTGGTGTTGAGAAATTGAGCATTGAAGAGGTTCAGAGAGTTGAATGGAAGAGTTTAGATGAAAAAATGAAGAAATGGATTCAGGCTGTTAAGATTTCTGTTAGGGTTCTTCTCACTGGTGAGAAGAGGATTTGTGATAGCGTTTTTGGTGATTTGAATGATATTAGAGATATCTGTTTCAATGAGACTGCTAAAGGCTGTGTTATGCAGTTGCTGAATTTTGGCGAGGCCGTCGCAATTTGCAAGCGGTCGCCGGAGAAATTGTTTAGGATCTTGGACATGTATGAGGCATTGAAGGATGCCTTGCCTGAACTTGAGACTCTGATCACTGATGGGTTTGTGATTGATGAGGCCAGTGGGGTGTTGAAGATGCTTGGTGAGGCTGCTAAGGGGACTTTCGCCGAGTTTGAGAATTGTCTTAGGAATGAGAGTTCTAAGAAGCCGGTTATATCCGGGGATGTTCATCCGTTGCCCCGGTATGTGATGAATTACTTGAAGTTGCTTGTTGATTATGGTGAGCCTATGGACGAGCTTCTAGTGATTAGCGATGAGGATCTTTACCGGTTGCAGAATTGTTTCGGCGGCGATAGTTCCCAGATAGAGAATATCTCGCCCTTGGGGTGCCGAATGGTGTTGTTGATTTCAGAGCTTGAGAATAACCTTGAGGAGAAATCTAAGCTTTATGAAGATAGTGCAATGCAATGTATATTTTTGATGAATAATATCCATTACTTGGTGAGGAAGGTGAAGGACTCAGAGCTTCGAAATGTCTTGGGAGATGATTGGATTCGCAAGCGGCGCGGTCAGGTTNNNNNNNNNNGAGCCTCTTGGACTAAGGCTTTGTCCTGTTTGAAGGATGAAGGGATTGGAGGAAGCTCTAACAATGCCTCGAAAATGGCTTTGAAGGAGAGGTTCAAGAACTTCAATGCATGCTTTGAGGAAATATATAGGATTCAGTCAGCATGGAAGGTACCGGATCCACAACTCCGGGAAGAACTCCGAATCTCTATATCAGAGAAGGTGATTCCTGCATACCGTTCCTTTGTGGGGCGGTTTCGGAGTCAGCTCGAGGGAAGACATGCCGGGAAGTACATTAAATATACTCCAGAGGATTTGGAGGCCTATTTACCAGATTTGTTTGAAGGATCACCTGCTGTATTGCACCACATAAGGAGGAAGAGTCAATAG 1635 0.4771 MDRTALPSSXXXXVNRRRIEIDRAENAIQLAMTRLEEELRHLLIRSTVPLDAESLHGSIRRVSLSFADGGTVDENLESFGEVNDQGGDSQRFHERGASLGDISIDLLRSDAVAELREIVDRMVRSGYEKECLQVYSSVRRDVLDEYLSILGVEKLSIEEVQRVEWKSLDEKMKKWIQAVKISVRVLLTGEKRICDSVFGDLNDIRDICFNETAKGCVMQLLNFGEAVAICKRSPEKLFRILDMYEALKDALPELETLITDGFVIDEASGVLKMLGEAAKGTFAEFENCLRNESSKKPVISGDVHPLPRYVMNYLKLLVDYGEPMDELLVISDEDLYRLQNCFGGDSSQIENISPLGCRMVLLISELENNLEEKSKLYEDSAMQCIFLMNNIHYLVRKVKDSELRNVLGDDWIRKRRGQVXXXXASWTKALSCLKDEGIGGSSNNASKMALKERFKNFNACFEEIYRIQSAWKVPDPQLREELRISISEKVIPAYRSFVGRFRSQLEGRHAGKYIKYTPEDLEAYLPDLFEGSPAVLHHIRRKSQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241787g00003 544 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 531 IPR004140 GO:0000145|GO:0006887
Stsc241787g00003 544 SUPERFAMILY Cullin repeat-like 14 530 IPR016159 -
Stsc241787g00003 544 Coils Coil 540 544 - -
Stsc241787g00003 544 Coils Coil 363 383 - -
Stsc241787g00003 544 Coils Coil 21 41 - -
Stsc241787g00003 544 Gene3D Exocyst complex component Exo70 8 536 - -
Stsc241787g00003 544 Pfam Exo70 exocyst complex subunit 173 525 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241787g00003 Stsc-Chr241787 21771 24578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241787g00003 21 543 EXO70 exocyst subunit family AT5G50380 63.168 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241787g00003 K07195 - gmx:100809716 798.89