Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241785g00007 ATGGATAATAATCCTTGTTTTGTTGTACCATACCATGATCCATATGACACTCCTCCACTCAGCCCGAGTTTTTTCGACATTTCCAACCCCACTCTTTTCGATCTTACCAATAATGTCCCCACAACGGGAACAGGACCCACTCACTCTCAACAACAGAATCATGGAATCCAAGATACTAATCTCCAACCAATTTTTGATCCGATGATTCTTCAAGATAGTAACAACTATGTGGGAGGAACATCAGGCAACAACTTCGAATCCATTCCATTGTTACAAGTGCATTCTGATCAAGGTTTGCCGCAGAATGATTTCATCAACAATGTGAATACTATGACACTGTCCTATTGGCCGCAGCCACCGGTCCCGTTTTCTTGTAGTTGTTGCAGTGTCCTCAGGGAAATCGTTTACACCAATGGGTTTAACTTTACAAAACTCGAAGTTCATGGAAGGCCTGGCTTGATCTCTCATGCAATTCAACATCCCACTATGAATGGAGATCATGCTTCCACTAGCAACCTTCAATACCAAATGATTGATTTTTGTAGGAGAAGCATTGATGATGTGAAGAATTTCCTAATTGAGTATTGTAGAGTGCAATGTGCGGCGGGGTACTTTATGTTGCAAGATCCATTATCTGCTTATTATGAAGCCCTATGCACTGGACTCGAATGGGTTGAAGAATTGAGCGATGACACTGACGATTTGAATGCAAGCAATTCAGATGATGAGAATGAACAAGTGGCTGATAATGGAGGAGGAACATCAGGAAAGGCTCCTAGAAAAATATCTCTTTCAGAACAGAGGGAAAGATCGGGGAAGATGACATTGGACGATTTTGCCCCTTATTTTCATATCCCAATTGAGGAAGCATCGAGGCAAATGAATATCTGCCCCACTGTTATGAAGAAAATTTGCCGTAGGGAAAAATTACAACGATGGCCTTACAGAAAGGTCAAAAGCACTGCAAAGAAGATCTCAAAACTTACGAAAACGATGGAATCAAAAGATGAAAGGGCAAAGGCAAGAATTCAGGCAGAAATTTATAGGCTCCATCTAAAATTAAGAGAGTTTTGTGCTGGACGATACCCATCTGGATTAGTTATACCCTGA 1110 0.4117 MDNNPCFVVPYHDPYDTPPLSPSFFDISNPTLFDLTNNVPTTGTGPTHSQQQNHGIQDTNLQPIFDPMILQDSNNYVGGTSGNNFESIPLLQVHSDQGLPQNDFINNVNTMTLSYWPQPPVPFSCSCCSVLREIVYTNGFNFTKLEVHGRPGLISHAIQHPTMNGDHASTSNLQYQMIDFCRRSIDDVKNFLIEYCRVQCAAGYFMLQDPLSAYYEALCTGLEWVEELSDDTDDLNASNSDDENEQVADNGGGTSGKAPRKISLSEQRERSGKMTLDDFAPYFHIPIEEASRQMNICPTVMKKICRREKLQRWPYRKVKSTAKKISKLTKTMESKDERAKARIQAEIYRLHLKLREFCAGRYPSGLVIP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241785g00007 369 MobiDBLite consensus disorder prediction 232 271 - -
Stsc241785g00007 369 PANTHER PROTEIN RKD4 114 348 IPR044607 GO:0003700
Stsc241785g00007 369 ProSiteProfiles RWP-RK domain profile. 253 341 IPR003035 -
Stsc241785g00007 369 Pfam RWP-RK domain 273 320 IPR003035 -
Stsc241785g00007 369 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241785g00007 Stsc-Chr241785 37720 39177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241785g00007 274 334 NLP Transcription Factor Family AT4G24020 39.344 9.06e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc241785g00007 RWP-RK 8.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241785g00007 - - adu:107470643 620.542