Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241784g00014 ATGAGCGCCACCAAGGAGTTCAAAGAAGTTCTCACCATGAGAACCGAGAACTTGAAAGTACATGAAAATAGGAGACAATTGTTTTCGGCTACTGGTTCTAAGGATGCTGCTAATCCTTTTGTCCGCCAACGGCCATTAGCTGCAAAGAAGGCTGCTAGTGCTTCTAATGCACCCTCACCTCCATGGGCTAGTTCGTCTTCATCTTCATCTGAGTTGTTTCCTAAGAAGCAAGCAGATGGGGAGAGTCAGCCATTGCTACAGCAATCGCAGCAACAACAGCAGCAGATGGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAATCCACTATTCATGAACTCAGCAATATCTTTAATCAATTAGCAACTCTCGTTTCCCAACAAGGAGAGATTGCCATCAGAATTGATGAGAACATGGATGATACATTGGCAAACGTAGAAGGTGCACAAGGGGCTCTGTTGAAGTATCTGAACAACATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTCATGATTTTCTTATTTTTTGTGGCATAG 582 0.421 MSATKEFKEVLTMRTENLKVHENRRQLFSATGSKDAANPFVRQRPLAAKKAASASNAPSPPWASSSSSSSELFPKKQADGESQPLLQQSQQQQQQMVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNNISSNRWLMIKIFFVLIFFLMIFLFFVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241784g00014 193 MobiDBLite consensus disorder prediction 57 99 - -
Stsc241784g00014 193 SUPERFAMILY t-snare proteins 2 156 IPR010989 GO:0016020|GO:0016192
Stsc241784g00014 193 Pfam SNARE domain 137 189 IPR000727 -
Stsc241784g00014 193 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 101 163 IPR000727 -
Stsc241784g00014 193 SMART tSNARE_6 96 163 IPR000727 -
Stsc241784g00014 193 CDD SNARE_syntaxin5 104 180 - -
Stsc241784g00014 193 MobiDBLite consensus disorder prediction 14 99 - -
Stsc241784g00014 193 Gene3D - 1 156 - -
Stsc241784g00014 193 ProSitePatterns Syntaxin / epimorphin family signature. 107 146 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc241784g00014 193 PANTHER SYNTAXIN 5 186 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241784g00014 Stsc-Chr241784 80872 85077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241784g00014 1 193 SNARE and Associated Proteins AT3G24350 76.263 8.58e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241784g00014 K08490 - gmx:100777961 251.136