Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241784g00008 ATGGCGGAAGATAATAATGAAGTCACACAAACCTTTAAGGATTTGGGCTTATCTGAGGAATTGGCAGAAGCTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATTCAATCAGAAGCGATTCCTCTTGCTCTTCAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCACTCTTAGAAGCGCCACGCCCGAATGATTTCTTCGCATGTGTGTTGTCTCCCACAAGAGAGCTTGCTATTCAAATTTCTGAGCAGTTTGAAGCTTTAGGGTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAGCAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTCGGAACACCAGGACGCATTTTAGATCACCTCAAAAACACCAAAGGATTTTCTCTTAATAGATTAAAATATCTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTCAATGAGATTATACAACTGATTCCTCGTGAGCGGAGAACATTCCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAACTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCGGCCTCTAAGTACTCCACTGTTGACACACTGAAGCAGCAGTATCGTTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTGTACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACCCGTACATGTGATTCAACTCGTCTTCTGGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAGAGACTTGGAGCCTTGAATTTATTCAAGTCTGGGGCGCGCAATATTCTCATATGTACCGATGTAGCTAGTAGAGGACTGGATATTCCAACAGTAGATGTTGTGATTAACTACGACATCCCCACAAACTCCAAAGATTACATACATCGTGTAGGAAGAACTGCTCGTGCAGGGCGCTCCGGGGTTGCCGTTTCTCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATTGAGAAACTTATAGGCAAGAAGCTACCCGAATATCCAGCACAAGAAGAGGAAGTTCTGCTCTTGGAAGAGCGGGTTAGCGAGGCCAAACGATTATCAGTAATGAAAATGAAGGAGGAAGCCATAGGGAAGAAGAAACGGAGAGGTGAATCAGATTATGATGAAGAAGATATTGACAAATACTTGGGTCTCAAGGATAAGAAGTCATCCAAAAAGTTCAGAAGATGA 1323 0.4248 MAEDNNEVTQTFKDLGLSEELAEACDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRILDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAVSLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKMKEEAIGKKKRRGESDYDEEDIDKYLGLKDKKSSKKFRR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241784g00008 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 385 IPR001650 -
Stsc241784g00008 440 Pfam Helicase conserved C-terminal domain 241 346 IPR001650 -
Stsc241784g00008 440 CDD SF2_C_DEAD 226 355 - -
Stsc241784g00008 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Stsc241784g00008 440 SMART helicmild6 265 346 IPR001650 -
Stsc241784g00008 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Stsc241784g00008 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Stsc241784g00008 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 367 IPR027417 -
Stsc241784g00008 440 Gene3D - 220 392 IPR027417 -
Stsc241784g00008 440 Gene3D - 1 219 IPR027417 -
Stsc241784g00008 440 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 3 407 - -
Stsc241784g00008 440 CDD DEADc_DDX47 11 215 IPR044765 GO:0005524
Stsc241784g00008 440 Pfam DEAD/DEAH box helicase 35 203 IPR011545 GO:0003676|GO:0005524
Stsc241784g00008 440 SMART ultradead3 29 229 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241784g00008 Stsc-Chr241784 41788 47917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241784g00008 4 378 Eukaryotic Initiation Factors Gene Family AT3G19760 30.871 1.22e-61 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241784g00008 K14777 - gmx:100775796 786.563